Co-expression analysis

Gene ID	PtpAffx.220115.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g23640: HGL1 (heteroglycan glucosidase 1) (HF=7e-89)
Module size	9 genes
NF	0.55
%ile	85.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.84	97.1	0.98	PtpAffx.220115.1.S1_at	pmrna36450	hypothetical protein	-	7e-89	At3g23640	HGL1 (heteroglycan glucosidase 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.98	Ptp.5393.1.S1_at	BU837915	hypothetical protein	-	1e-84	At4g38510	vacuolar ATP synthase subunit B, putative / V-ATPase B subunit, putative / vacuolar proton pump B subunit, putative / V-ATPase 57 kDa subunit, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.98	PtpAffx.32630.1.A1_at	DN489947	endoplasmic reticulum [ER]-type calcium ATPase	-	2e+0	At1g33811	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.52	79.4	0.97	PtpAffx.1601.27.S1_at	CK093780	hypothetical protein	-	1e+1	At5g62980	dihydroneopterin aldolase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.52	79.4	0.98	Ptp.3421.2.S1_at	CF119199	hypothetical protein	-	8e-23	At4g29010	AIM1 (ABNORMAL INFLORESCENCE MERISTEM)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.98	Ptp.557.1.A1_at	CK088721	hypothetical protein	-	9e+0	At5g63060	transporter	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.98	PtpAffx.15456.1.S1_at	CF229022	arginine methyltransferease	-	1e-15	At2g19670	PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.45	72.3	0.98	PtpAffx.158107.3.S1_at	CK088568	hypothetical protein	-	7e+0	At5g22440	60S ribosomal protein L10A (RPL10aC)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	0.98	Ptp.674.1.A1_at	CK087369	hypothetical protein	-	2e-11	At4g13780	methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.7	91.8	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7	85.5	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage