Co-expression analysis

Gene ID PtpAffx.220086.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g29075: glycine-rich protein (HF=1e-3)
Module size 36 genes
NF 0.22
%ile 40.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9097.90.81PtpAffx.220086.1.S1_atpmrna36400hypothetical protein-1e-3At3g29075glycine-rich proteinO.I.H.G.S.X.
0.4167.70.87PtpAffx.209684.1.S1_atpmrna19114hypothetical protein-2e+0At1g03982-O.I.H.G.S.X.
0.3559.70.87PtpAffx.99494.1.S1_atBU875809--1e+0At4g39235unknown proteinO.I.H.G.S.X.
0.3559.70.83Ptp.5471.2.S1_atCV279210--3e-23At3g16640TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)O.I.H.G.S.X.
0.3458.30.87PtpAffx.201169.1.S1_atpmrna2304hypothetical protein-6e-1At3g16040-O.I.H.G.S.X.
0.3357.50.87PtpAffx.207366.1.S1_atpmrna14615hypothetical protein-2e-15At2g18260SYP112 (SYNTAXIN OF PLANTS 112)O.I.H.G.S.X.
0.3357.50.84PtpAffx.217446.1.S1_atpmrna32705hypothetical protein-8e-2At2g19960hAT dimerisation domain-containing protein / transposase-relatedO.I.H.G.S.X.
0.2950.50.93PtpAffx.200200.1.S1_x_atpmrna370hypothetical protein-2e-16At3g24160PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN)O.I.H.G.S.X.
0.2950.50.84PtpAffx.120923.1.A1_atCV260431--1e+0At4g11140CRF1 (CYTOKININ RESPONSE FACTOR 1)O.I.H.G.S.X.
0.2747.10.91PtpAffx.200651.1.S1_atpmrna1267hypothetical protein-3e-6At3g16350myb family transcription factorO.I.H.G.S.X.
0.2645.20.87PtpAffx.45220.1.A1_atCV228824hypothetical protein-1e+0At3g61200thioesterase family proteinO.I.H.G.S.X.
0.2340.50.91PtpAffx.5661.4.A1_a_atBU874770hypothetical protein-4e-22At1g64650-O.I.H.G.S.X.
0.2238.30.88PtpAffx.209785.1.S1_atpmrna19302hypothetical protein-9e-165At5g46290KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I)O.I.H.G.S.X.
0.2136.50.86PtpAffx.203461.1.S1_atpmrna6895hypothetical protein-3e-1At4g10250ATHSP22.0O.I.H.G.S.X.
0.2136.50.94PtpAffx.54386.1.A1_s_atCV241824hypothetical protein-6e+0Atcg01270-O.I.H.G.S.X.
0.2034.60.90PtpAffx.77720.1.A1_atCK096840--4e-32At3g02300regulator of chromosome condensation (RCC1) family proteinO.I.H.G.S.X.
0.2034.60.86PtpAffx.224329.1.S1_atpmrna42778cc-nbs-lrr resistance protein-2e+0At3g44710unknown proteinO.I.H.G.S.X.
0.2034.60.89PtpAffx.49812.1.A1_atDN489026--2e-6At5g14120nodulin family proteinO.I.H.G.S.X.
0.2034.60.91PtpAffx.37541.1.A1_s_atCV238987hypothetical protein-2e-62At5g26667PYR6O.I.H.G.S.X.
0.1932.70.93PtpAffx.202007.1.S1_atpmrna4000amino acid transporter-2e-1At1g52040MBP1 (MYROSINASE-BINDING PROTEIN 1)O.I.H.G.S.X.
0.1932.70.88PtpAffx.217521.1.S1_atpmrna32816hypothetical protein-2e+0At3g22570protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.1729.10.89PtpAffx.131267.1.S1_s_atDN500745hypothetical protein-2e-3At5g48910pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.1729.10.94PtpAffx.40097.1.S1_atCV262442hypothetical protein-5e-27At1g63050membrane bound O-acyl transferase (MBOAT) family proteinO.I.H.G.S.X.
0.1729.10.93PtpAffx.222503.1.S1_atpmrna39978hypothetical protein-2e-115At4g38200guanine nucleotide exchange family proteinO.I.H.G.S.X.
0.1729.10.89PtpAffx.211249.1.S1_atpmrna22080--1e-11At5g24670catalytic/ hydrolase/ zinc ion bindingO.I.H.G.S.X.
0.1626.90.93Ptp.5560.1.A1_atCK087847hypothetical protein-5e+0At5g52040ATRSP41O.I.H.G.S.X.
0.1626.90.88PtpAffx.7425.1.S1_a_atCA824840hypothetical protein-5e-3At1g31440SH3 domain-containing protein 1 (SH3P1)O.I.H.G.S.X.
0.1626.90.93Ptp.2347.1.A1_x_atCV280648hypothetical protein-1e-140At3g27240cytochrome c1, putativeO.I.H.G.S.X.
0.1321.60.91Ptp.2766.1.S1_s_atCX184787hypothetical protein-2e-2At1g30620MUR4 (MURUS 4)O.I.H.G.S.X.
0.1219.60.89PtpAffx.200831.1.S1_atpmrna1622hypothetical protein-1e-14At3g57650LPAT2O.I.H.G.S.X.
0.1219.60.91PtpAffx.155706.1.S1_atCF230473hypothetical protein-2e-61At3g22750protein kinase, putativeO.I.H.G.S.X.
0.1118.10.86PtpAffx.201989.1.S1_s_atpmrna3968hypothetical protein-4e-1At2g43640signal recognition particle 14 kDa family protein / SRP14 family proteinO.I.H.G.S.X.
0.1118.10.86PtpAffx.123076.1.A1_atCK093694--2e+1At2g40000HSPRO2 (ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2)O.I.H.G.S.X.
0.1016.30.93PtpAffx.21546.1.S1_atDN494511hypothetical protein-4e+0At4g01460basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.0812.90.94PtpAffx.63071.1.A1_atCV255719--1e-1At4g19200proline-rich family proteinO.I.H.G.S.X.
0.069.80.89Ptp.2592.2.S1_x_atCX185841thioredoxin h-8e-6At1g45145ATTRX5O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.796.3GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.684.5GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.684.5GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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