Co-expression analysis

Gene ID	PtpAffx.220063.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g16770: AtMYB9 (myb domain protein 9) (HF=3e-10)
Module size	23 genes
NF	0.25
%ile	44.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.98	100.0	0.83	PtpAffx.220063.1.S1_at	pmrna36349	hypothetical protein	-	3e-10	At5g16770	AtMYB9 (myb domain protein 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.90	PtpAffx.79840.1.S1_at	CK090827	hypothetical protein	-	4e-1	At1g75550	glycine-rich protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.96	Ptp.5782.1.S1_at	CV271204	hypothetical protein	-	2e-77	At5g47200	ATRAB1A	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.91	Ptp.5821.1.S1_at	CV240646	glutathione peroxidase	-	6e-28	At2g43350	ATGPX3 (GLUTATHIONE PEROXIDASE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.89	PtpAffx.52652.1.A1_at	CA824023	hypothetical protein	-	7e-3	At1g69320	CLE10 (CLAVATA3/ESR-RELATED 10)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.92	PtpAffx.11615.1.A1_at	CV259125	hypothetical protein	-	3e-11	At3g58190	LBD29 (LATERAL ORGAN BOUNDARIES-DOMAIN 29)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	0.92	Ptp.2685.1.S1_at	CK113401	hypothetical protein	-	5e-6	At4g23885	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.95	PtpAffx.13274.1.A1_a_at	CV259095	hypothetical protein	-	2e-18	At3g48570	protein transport protein SEC61 gamma subunit, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.90	PtpAffx.208129.1.S1_at	pmrna16143	hypothetical protein	-	3e-2	At5g28288	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.93	PtpAffx.249.93.S1_at	BP934988	hypothetical protein	-	0	At5g13490	AAC2 (ADP/ATP carrier 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.88	Ptp.5073.1.S1_at	CV225491	hypothetical protein	-	4e-22	At5g54500	FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.95	PtpAffx.104857.1.S1_a_at	CK106237	hypothetical protein	-	8e-12	At2g38670	PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.92	PtpAffx.224432.1.S1_x_at	pmrna42954	hypothetical protein	-	4e-126	At2g16280	KCS9 (3-KETOACYL-COA SYNTHASE 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.94	PtpAffx.10087.1.A1_at	CV259549	hypothetical protein	-	1e-13	At2g36310	URH1 (URIDINE-RIBOHYDROLASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.96	Ptp.1277.1.S1_x_at	CA825686	hypothetical protein	-	2e-5	At1g51650	ATP synthase epsilon chain, mitochondrial	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.95	PtpAffx.150303.2.S1_s_at	CX186802	hypothetical protein	-	9e-8	At3g24530	AAA-type ATPase family protein / ankyrin repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.89	Ptp.3386.1.S1_s_at	CV245898	beta-ketoacyl-coa synthase family protein	-	3e-22	At2g26640	KCS11 (3-KETOACYL-COA SYNTHASE 11)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.95	PtpAffx.221124.1.S1_s_at	pmrna37742	hypothetical protein	-	1e-13	At1g47750	PEX11A (PEROXIN 11A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.91	PtpAffx.36261.2.S1_at	CX183660	hypothetical protein	-	3e-2	At1g60800	NIK3 (NSP-INTERACTING KINASE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.93	PtpAffx.454.7.A1_s_at	CV281713	hypothetical protein	-	2e-100	At3g56800	CAM3 (CALMODULIN 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.94	PtpAffx.51742.1.S1_at	CV243886	hypothetical protein	-	7e-45	At3g02090	mitochondrial processing peptidase beta subunit, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.94	Ptp.3867.1.S1_s_at	CV243174	hypothetical protein	-	1e-97	At1g78300	GRF2 (GENERAL REGULATORY FACTOR 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.95	PtpAffx.202487.1.S1_at	pmrna4986	hypothetical protein	-	8e-32	At3g21610	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	93.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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