Co-expression analysis

Gene ID PtpAffx.220057.1.S1_x_at
Gene name
Homology with ArabidopsisSimilar to At1g27710: glycine-rich protein (HF=3e-2)
Module size 6 genes
NF 0.04
%ile 9.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.87PtpAffx.220057.1.S1_x_atpmrna36333--3e-2At1g27710glycine-rich proteinO.I.H.G.S.X.
0.0711.60.94PtpAffx.10046.1.S1_atCV232425hypothetical protein-8e-4At1g27000bZIP family transcription factorO.I.H.G.S.X.
0.069.80.94Ptp.3364.1.S1_atBU814868hypothetical protein-2e-17At2g41160ubiquitin-associated (UBA)/TS-N domain-containing proteinO.I.H.G.S.X.
0.035.20.90PtpAffx.23813.2.S1_atDN501818hypothetical protein-5e-25At5g55990CBL2 (CALCINEURIN B-LIKE 2)O.I.H.G.S.X.
0.023.60.94Ptp.3001.2.A1_s_atBP937097hypothetical protein-1e-3At2g44520COX10 (cytochrome c oxidase 10)O.I.H.G.S.X.
0.023.60.92PtpAffx.100713.1.S1_a_atAJ774230hypothetical protein-8e-39At3g49100signal recognition particle 9 kDa protein, putative / SRP9, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.096.6GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.896.4GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM328561Populus x canescens root control_rep_12GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
1.886.4GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.886.4GSM328277Populus x canescens root control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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