Co-expression analysis

Gene ID	PtpAffx.219999.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g18170: GDH1 (GLUTAMATE DEHYDROGENASE 1) (HF=9e-6)
Module size	8 genes
NF	0.11
%ile	21.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.39	64.6	0.80	PtpAffx.219999.1.S1_at	pmrna36231	hypothetical protein	-	9e-6	At5g18170	GDH1 (GLUTAMATE DEHYDROGENASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.84	PtpAffx.24667.1.A1_at	CV251328	-	-	1e+0	At3g30220	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.82	PtpAffx.11967.2.S1_at	CV244989	-	-	6e-8	At1g19130	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.83	PtpAffx.201798.1.S1_at	pmrna3581	hypothetical protein	-	7e-1	At4g23030	MATE efflux protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.83	PtpAffx.223404.1.S1_at	pmrna41390	hypothetical protein	-	8e-1	At3g25050	XTH3 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.83	PtpAffx.135992.1.A1_at	CK094213	-	-	3e+0	At5g56760	ATSERAT1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.83	PtpAffx.216965.1.S1_at	pmrna32048	hypothetical protein	-	2e+0	At3g14452	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	0.82	PtpAffx.212501.1.S1_at	pmrna24485	hypothetical protein	-	8e-3	At1g51620	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.7	94.7	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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