Co-expression analysis

Gene ID	PtpAffx.219974.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g45040: matrix metalloproteinase (HF=2e-3)
Module size	6 genes
NF	0.64
%ile	92.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.90	PtpAffx.219974.1.S1_at	pmrna36177	hypothetical protein	-	2e-3	At2g45040	matrix metalloproteinase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.91	PtpAffx.25308.1.S1_a_at	CN550378	-	-	4e+0	At5g20970	heat shock family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	0.92	PtpAffx.25308.1.S1_x_at	CN550378	-	-	4e+0	At5g20970	heat shock family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.93	PtpAffx.220048.1.S1_at	pmrna36320	hypothetical protein	-	7e-7	At2g35270	DNA-binding protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.91	PtpAffx.23330.1.S1_at	CX656526	hypothetical protein	-	2e-12	At4g25300	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.94	PtpAffx.211928.1.S1_at	pmrna23424	hypothetical protein	-	2e+0	At2g33793	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.4	99.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
6.1	97.6	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.5	90.9	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.2	89.3	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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