Co-expression analysis

Gene ID	PtpAffx.219829.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g01990: auxin efflux carrier family protein (HF=1e-57)
Module size	14 genes
NF	0.37
%ile	63.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	87.0	0.90	PtpAffx.219829.1.S1_at	pmrna35973	hypothetical protein	-	1e-57	At5g01990	auxin efflux carrier family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.91	PtpAffx.89023.1.A1_at	CV256843	hypothetical protein	-	2e+0	At5g59880	ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.93	PtpAffx.221492.1.S1_at	pmrna38398	hypothetical protein	-	4e-1	At3g59320	integral membrane protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.95	PtpAffx.12016.2.S1_a_at	CX174164	hypothetical protein	-	1e-19	At1g24360	3-oxoacyl-(acyl-carrier protein) reductase, chloroplast / 3-ketoacyl-acyl carrier protein reductase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.93	PtpAffx.207727.1.S1_at	pmrna15356	hypothetical protein	-	2e+0	Atmg01330	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.92	PtpAffx.108468.1.A1_at	CV248471	-	-	2e-2	At4g38280	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.94	PtpAffx.7888.3.S1_at	CX660119	hypothetical protein	-	6e-34	At4g39120	IMPL2 (MYO-INOSITOL MONOPHOSPHATASE LIKE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.91	PtpAffx.37594.1.A1_at	CV245293	hypothetical protein	-	5e-50	At4g00490	BAM2 (BETA-AMYLASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.92	PtpAffx.132467.1.S1_s_at	CB239543	hypothetical protein	-	6e-61	At5g28840	GME (GDP-D-MANNOSE 3',5'-EPIMERASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.92	PtpAffx.117432.1.S1_at	BU896010	hypothetical protein	-	3e-8	At3g12160	RABA4D (RAB GTPASE HOMOLOG A4D)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.92	PtpAffx.160378.1.A1_at	CV236353	hypothetical protein	-	1e-7	At3g19180	ARC6H	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.92	PtpAffx.223244.1.S1_at	pmrna41137	-	-	7e-32	At5g49950	embryogenesis-associated protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.92	PtpAffx.263.1.S1_at	BP930744	hypothetical protein	-	7e-6	At3g55850	LAF3 (LONG AFTER FAR-RED 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.92	PtpAffx.48202.1.A1_at	DN492258	hypothetical protein	-	3e-1	At4g34680	GATA transcription factor 3, putative (GATA-3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.6	96.2	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.5	96.1	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.5	96.1	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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