Co-expression analysis

Gene ID PtpAffx.219809.1.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g10040: transcription factor (HF=6e-23)
Module size 6 genes
NF 0.66
%ile 94.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.98PtpAffx.219809.1.S1_s_atpmrna35920hypothetical protein-6e-23At3g10040transcription factorO.I.H.G.S.X.
0.6791.10.98PtpAffx.35496.1.A1_atDN487965cytochrome P450-7e-3At1g75130CYP721A1O.I.H.G.S.X.
0.6791.10.98Ptp.3963.1.S1_atDN488508gtp-binding protein SAR1-5e-50At4g02080ATSAR2 (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 2)O.I.H.G.S.X.
0.5582.20.98PtpAffx.26699.1.S1_atCV242578--5e+0At5g63270nitrate-responsive NOI protein, putativeO.I.H.G.S.X.
0.5380.50.97PtpAffx.222664.1.S1_atpmrna40216hypothetical protein-7e-1At4g19840ATPP2-A1O.I.H.G.S.X.
0.4067.00.97PtpAffx.46129.1.S1_atCV230659hypothetical protein-4e+0At2g38646unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.898.7GSM327406Populus balsamifera_1006_young_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.596.1GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
3.594.3GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM327400Populus balsamifera_20071015_Etiolated_seedling_6d_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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