Co-expression analysis

Gene ID PtpAffx.219791.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g53150: UGT73D1 (UDP-glucosyl transferase 73D1) (HF=3e-3)
Module size 6 genes
NF 0.53
%ile 83.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6388.10.89PtpAffx.219791.1.S1_atpmrna35884hypothetical protein-3e-3At3g53150UGT73D1 (UDP-glucosyl transferase 73D1)O.I.H.G.S.X.
0.6791.10.94Ptp.7236.1.S1_s_atCV255575hypothetical protein-9e-2At3g51790ATG1 (ARABIDOPSIS TRANSMEMBRANE PROTEIN G1P-RELATED 1)O.I.H.G.S.X.
0.5784.20.90PtpAffx.93557.1.A1_atBP932995hypothetical protein-4e+0At5g41860unknown proteinO.I.H.G.S.X.
0.3661.60.93PtpAffx.225666.1.S1_atpmrna45178hypothetical protein-1e-5At3g51330aspartyl protease family proteinO.I.H.G.S.X.
0.3357.50.93PtpAffx.151889.1.A1_atBP932620hypothetical protein-1e+0At5g3767015.7 kDa class I-related small heat shock protein-like (HSP15.7-CI)O.I.H.G.S.X.
0.3153.70.93PtpAffx.29282.1.A1_a_atBP934395hypothetical protein-2e-13At5g27450MK (MEVALONATE KINASE)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.894.9GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
3.193.2GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.289.3GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM328561Populus x canescens root control_rep_12GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
1.684.5GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.684.5GSM327397Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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