Co-expression analysis

Gene ID	PtpAffx.219714.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g19230: respiratory burst oxidase protein E (RbohE) / NADPH oxidase (HF=6e-33)
Module size	6 genes
NF	0.38
%ile	65.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	97.0	0.84	PtpAffx.219714.1.S1_at	pmrna35717	hypothetical protein	-	6e-33	At1g19230	respiratory burst oxidase protein E (RbohE) / NADPH oxidase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.89	PtpAffx.57322.1.A1_at	CV230430	-	-	4e+0	At5g39790	5'-AMP-activated protein kinase beta-1 subunit-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.86	PtpAffx.249.325.S1_at	CN550269	hypothetical protein	-	1e-2	At1g21925	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.90	PtpAffx.136820.1.S1_a_at	CV275296	hypothetical protein	-	6e-24	At1g71010	phosphatidylinositol-4-phosphate 5-kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.85	PtpAffx.223441.1.S1_at	pmrna41453	hypothetical protein	-	2e-7	At4g08500	MEKK1 (MAP KINASE KINASE KINASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.89	PtpAffx.41901.1.S1_at	CK115521	-	-	6e+0	At5g14510	armadillo/beta-catenin repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.5	99.4	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.9	96.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.4	90.4	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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