Co-expression analysis

Gene ID PtpAffx.219714.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g19230: respiratory burst oxidase protein E (RbohE) / NADPH oxidase (HF=6e-33)
Module size 6 genes
NF 0.38
%ile 65.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8397.00.84PtpAffx.219714.1.S1_atpmrna35717hypothetical protein-6e-33At1g19230respiratory burst oxidase protein E (RbohE) / NADPH oxidaseO.I.H.G.S.X.
0.5582.20.89PtpAffx.57322.1.A1_atCV230430--4e+0At5g397905'-AMP-activated protein kinase beta-1 subunit-relatedO.I.H.G.S.X.
0.4067.00.86PtpAffx.249.325.S1_atCN550269hypothetical protein-1e-2At1g21925-O.I.H.G.S.X.
0.4067.00.90PtpAffx.136820.1.S1_a_atCV275296hypothetical protein-6e-24At1g71010phosphatidylinositol-4-phosphate 5-kinase family proteinO.I.H.G.S.X.
0.2136.50.85PtpAffx.223441.1.S1_atpmrna41453hypothetical protein-2e-7At4g08500MEKK1 (MAP KINASE KINASE KINASE 1)O.I.H.G.S.X.
0.2034.60.89PtpAffx.41901.1.S1_atCK115521--6e+0At5g14510armadillo/beta-catenin repeat family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.599.4GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
4.996.5GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.894.9GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.794.7GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.490.4GSM328561Populus x canescens root control_rep_12GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.188.6GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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