Co-expression analysis

Gene ID	PtpAffx.2197.3.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At3g16780: 60S ribosomal protein L19 (RPL19B) (HF=2e-55)
Module size	8 genes
NF	0.59
%ile	89.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	88.4	0.97	PtpAffx.2197.3.S1_a_at	CV239402	-	-	2e-55	At3g16780	60S ribosomal protein L19 (RPL19B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.98	Ptp.19.1.S1_x_at	CK092960	hypothetical protein	-	2e-77	At5g02960	40S ribosomal protein S23 (RPS23B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.98	Ptp.5650.1.S1_s_at	CV256740	hypothetical protein	-	6e-59	At5g48760	60S ribosomal protein L13A (RPL13aD)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.98	Ptp.1429.1.S1_s_at	CK092719	hypothetical protein	-	2e-3	At1g77940	60S ribosomal protein L30 (RPL30B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.98	Ptp.2018.1.S1_a_at	CV246414	hypothetical protein	-	9e-70	At1g70600	structural constituent of ribosome	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.98	Ptp.5614.1.S1_at	CF936712	hypothetical protein	-	7e-71	At3g60770	40S ribosomal protein S13 (RPS13A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.98	Ptp.3122.1.S1_x_at	CV283508	hypothetical protein	-	4e-17	At3g10090	40S ribosomal protein S28 (RPS28A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.98	PtpAffx.18640.1.A1_s_at	CV239752	hypothetical protein	-	3e-45	At5g18380	40S ribosomal protein S16 (RPS16C)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	93.7	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM327358	Populus balsamifera_20071015_Seedling_continuous_light_6d_2	GSE13990	Populus balsamifera developmental tissue series
1.5	83.5	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
1.5	83.5	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
1.5	83.5	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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