Co-expression analysis

Gene ID	PtpAffx.219686.1.S1_at
Gene name	cytochrome P450
Homology with Arabidopsis	Similar to At3g14650: CYP72A11 (HF=1e+0)
Module size	6 genes
NF	0.35
%ile	60.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.36	61.6	0.90	PtpAffx.219686.1.S1_at	pmrna35660	cytochrome P450	-	1e+0	At3g14650	CYP72A11	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.90	PtpAffx.28818.1.S1_at	BU812529	-	-	4e+0	At4g14305	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.89	PtpAffx.212939.1.S1_at	pmrna25319	hypothetical protein	-	2e-8	At5g07380	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.90	PtpAffx.222656.1.S1_at	pmrna40203	hypothetical protein	-	4e-2	At1g33340	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.90	PtpAffx.203936.1.S1_at	pmrna7766	hypothetical protein	-	7e-1	At3g06740	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.90	PtpAffx.209579.1.S1_at	pmrna18958	hypothetical protein	-	2e-1	At3g52150	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.2	95.6	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7	85.5	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage