CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.219663.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g43505: LCR30 (Low-molecular-weight cysteine-rich 30) (HF=1e+1)

Module size 6 genes

NF 0.13

%ile 25.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 83.9 0.79 PtpAffx.219663.1.S1_at pmrna35630 hypothetical protein - 1e+1 At3g43505 LCR30 (Low-molecular-weight cysteine-rich 30) O.I. H.G. S.X.
0.50 78.6 0.82 PtpAffx.211286.1.S1_at pmrna22136 hypothetical protein - 6e-1 At4g19820 glycosyl hydrolase family 18 protein O.I. H.G. S.X.
0.11 18.1 0.81 PtpAffx.213043.1.S1_at pmrna25524 hypothetical protein - 1e+0 At5g12050 unknown protein O.I. H.G. S.X.
0.09 14.6 0.80 Ptp.8093.2.A1_at CV260421 hypothetical protein - 3e+0 At5g39630 vesicle transport v-SNARE family protein O.I. H.G. S.X.
0.08 12.9 0.80 PtpAffx.215859.1.S1_s_at pmrna30283 hypothetical protein - 2e+0 At2g39435 unknown protein O.I. H.G. S.X.
0.06 9.8 0.81 PtpAffx.217536.1.S1_at pmrna32841 hypothetical protein - 2e-25 At1g05610 APS2 (ADP-glucose pyrophoshorylase small subunit 2) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.40	67.0	0.82	PtpAffx.208609.1.S1_at	pmrna17094	hypothetical protein	-	4e-1	At3g52720	ACA1 (ALPHA CARBONIC ANHYDRASE 1)	O.I.	H.G.	S.X.
0.22	38.3	0.75	PtpAffx.220196.1.S1_at	pmrna36553	hypothetical protein	-	1e+1	At2g18270	unknown protein	O.I.	H.G.	S.X.
0.19	32.7	0.82	PtpAffx.213129.1.S1_at	pmrna25694	hypothetical protein	-	5e+0	At5g40000	AAA-type ATPase family protein	O.I.	H.G.	S.X.
0.18	30.8	0.78	PtpAffx.213491.1.S1_at	pmrna26376	hypothetical protein	-	1e+0	At5g23680	sterile alpha motif (SAM) domain-containing protein	O.I.	H.G.	S.X.
0.15	25.3	0.74	PtpAffx.217258.1.S1_at	pmrna32447	multidrug resistance protein ABC transporter family	-	8e-3	At3g13090	ATMRP8	O.I.	H.G.	S.X.
0.14	23.5	0.79	PtpAffx.217595.1.S1_x_at	pmrna32927	hypothetical protein	-	1e+0	Atcg00730	-	O.I.	H.G.	S.X.
0.12	19.6	0.71	PtpAffx.225052.1.S1_at	pmrna44132	hypothetical protein	-	3e-7	At1g22640	MYB3 (MYB DOMAIN PROTEIN 3)	O.I.	H.G.	S.X.
0.12	19.6	0.75	PtpAffx.69716.1.A1_at	CV245724	-	-	8e-1	At3g53820	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.
0.11	18.1	0.80	PtpAffx.220154.1.S1_at	pmrna36508	-	-	1e+1	At4g21740	unknown protein	O.I.	H.G.	S.X.
0.10	16.3	0.77	PtpAffx.207244.1.S1_at	pmrna14356	hypothetical protein	-	8e-7	At5g58900	myb family transcription factor	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.0 98.4 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.3 96.9 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.0 95.3 GSM362890 Clone1979_LPI5_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.9 95.1 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.5 94.3 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6 91.3 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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