CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.219663.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g43505: LCR30 (Low-molecular-weight cysteine-rich 30) (HF=1e+1)

Module size 6 genes

NF 0.13

%ile 25.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 83.9 0.79 PtpAffx.219663.1.S1_at pmrna35630 hypothetical protein - 1e+1 At3g43505 LCR30 (Low-molecular-weight cysteine-rich 30) O.I. H.G. S.X.
0.50 78.6 0.82 PtpAffx.211286.1.S1_at pmrna22136 hypothetical protein - 6e-1 At4g19820 glycosyl hydrolase family 18 protein O.I. H.G. S.X.
0.11 18.1 0.81 PtpAffx.213043.1.S1_at pmrna25524 hypothetical protein - 1e+0 At5g12050 unknown protein O.I. H.G. S.X.
0.09 14.6 0.80 Ptp.8093.2.A1_at CV260421 hypothetical protein - 3e+0 At5g39630 vesicle transport v-SNARE family protein O.I. H.G. S.X.
0.08 12.9 0.80 PtpAffx.215859.1.S1_s_at pmrna30283 hypothetical protein - 2e+0 At2g39435 unknown protein O.I. H.G. S.X.
0.06 9.8 0.81 PtpAffx.217536.1.S1_at pmrna32841 hypothetical protein - 2e-25 At1g05610 APS2 (ADP-glucose pyrophoshorylase small subunit 2) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.0 98.4 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.3 96.9 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.0 95.3 GSM362890 Clone1979_LPI5_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.9 95.1 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.5 94.3 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6 91.3 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the maize gene, Zm.11815.1.A1_a_at, orthologous to the query gene, PtpAffx.219663.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 95.6 Zm.11815.1.A1_a_at At3g43505 hypothetical protein LOC100278908 - 4e-1 At2g07706 unknown protein O.I. H.G. S.X.
0.67 85.8 Zm.6804.1.A1_at At3g43505 hypothetical protein LOC100280289 - 2e-66 At2g34250 protein transport protein sec61, putative O.I. H.G. S.X.
0.60 77.8 Zm.4300.2.A1_at At3g43505 - - 3e-8 At5g09880 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.44 55.7 Zm.17832.1.S1_at At3g43505 plastidic general dicarboxylate transporter - 7e-8 At5g64290 DIT2.1 (DICARBOXYLATE TRANSPORT 2.1) O.I. H.G. S.X.
0.44 55.7 Zm.13784.1.S1_at At3g43505 hypothetical protein LOC100192064 - 1e-5 At1g74260 PUR4 (purine biosynthesis 4) O.I. H.G. S.X.
0.42 51.3 Zm.258.1.S1_s_at At3g43505 hypothetical protein LOC100275973 - 2e-3 At3g09032 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera

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