CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.219663.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g43505: LCR30 (Low-molecular-weight cysteine-rich 30) (HF=1e+1)

Module size 6 genes

NF 0.13

%ile 25.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 83.9 0.79 PtpAffx.219663.1.S1_at pmrna35630 hypothetical protein - 1e+1 At3g43505 LCR30 (Low-molecular-weight cysteine-rich 30) O.I. H.G. S.X.
0.50 78.6 0.82 PtpAffx.211286.1.S1_at pmrna22136 hypothetical protein - 6e-1 At4g19820 glycosyl hydrolase family 18 protein O.I. H.G. S.X.
0.11 18.1 0.81 PtpAffx.213043.1.S1_at pmrna25524 hypothetical protein - 1e+0 At5g12050 unknown protein O.I. H.G. S.X.
0.09 14.6 0.80 Ptp.8093.2.A1_at CV260421 hypothetical protein - 3e+0 At5g39630 vesicle transport v-SNARE family protein O.I. H.G. S.X.
0.08 12.9 0.80 PtpAffx.215859.1.S1_s_at pmrna30283 hypothetical protein - 2e+0 At2g39435 unknown protein O.I. H.G. S.X.
0.06 9.8 0.81 PtpAffx.217536.1.S1_at pmrna32841 hypothetical protein - 2e-25 At1g05610 APS2 (ADP-glucose pyrophoshorylase small subunit 2) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.0 98.4 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.3 96.9 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.0 95.3 GSM362890 Clone1979_LPI5_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.9 95.1 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.5 94.3 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6 91.3 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the grape gene, 1615312_at, orthologous to the query gene, PtpAffx.219663.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 1615312_at At3g43505 - - 6e-33 At1g18080 ATARCA O.I. H.G. S.X.
0.31 41.3 1609640_at At3g43505 hypothetical protein LOC100244109 - 7e-24 At5g11340 GCN5-related N-acetyltransferase (GNAT) family protein O.I. H.G. S.X.
0.25 30.5 1616615_at At3g43505 hypothetical protein LOC100268085 - 3e-39 At2g44040 dihydrodipicolinate reductase family protein O.I. H.G. S.X.
0.22 25.6 1622222_at At3g43505 hypothetical LOC100241693 - 2e-4 At5g15630 IRX6 O.I. H.G. S.X.
0.20 22.4 1611738_at At3g43505 hypothetical protein LOC100259968 - 8e-39 At5g14200 3-isopropylmalate dehydrogenase, chloroplast, putative O.I. H.G. S.X.
0.13 13.3 1616726_at At3g43505 hypothetical protein LOC100255605 - 8e-11 At2g15290 TIC21 (TRANSLOCON AT INNER MEMBRANE OF CHLOROPLASTS 21) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage