Co-expression analysis

Gene ID	PtpAffx.219663.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g43505: LCR30 (Low-molecular-weight cysteine-rich 30) (HF=1e+1)
Module size	6 genes
NF	0.13
%ile	25.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	83.9	0.79	PtpAffx.219663.1.S1_at	pmrna35630	hypothetical protein	-	1e+1	At3g43505	LCR30 (Low-molecular-weight cysteine-rich 30)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.82	PtpAffx.211286.1.S1_at	pmrna22136	hypothetical protein	-	6e-1	At4g19820	glycosyl hydrolase family 18 protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.81	PtpAffx.213043.1.S1_at	pmrna25524	hypothetical protein	-	1e+0	At5g12050	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.80	Ptp.8093.2.A1_at	CV260421	hypothetical protein	-	3e+0	At5g39630	vesicle transport v-SNARE family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	0.80	PtpAffx.215859.1.S1_s_at	pmrna30283	hypothetical protein	-	2e+0	At2g39435	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.81	PtpAffx.217536.1.S1_at	pmrna32841	hypothetical protein	-	2e-25	At1g05610	APS2 (ADP-glucose pyrophoshorylase small subunit 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.0	98.4	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.3	96.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.9	95.1	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6	91.3	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g43505, orthologous to the query gene, PtpAffx.219663.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	O.I.	H.G.	S.X.	Other DB

Select a plant to compare co-expressed genes between species.

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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