Co-expression analysis

Gene ID	PtpAffx.219605.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g58440: XF1 (HF=2e-2)
Module size	11 genes
NF	0.35
%ile	61.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.49	75.7	0.91	PtpAffx.219605.1.S1_at	pmrna35564	hypothetical protein	-	2e-2	At1g58440	XF1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.70	91.7	0.93	PtpAffx.205143.1.S1_at	pmrna10181	hypothetical protein	-	6e-2	At5g41260	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.95	PtpAffx.388.3.S1_s_at	CN523140	hypothetical protein	-	5e-29	At5g55120	VTC5 (VITAMIN C DEFECTIVE 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.94	PtpAffx.127300.1.A1_at	CV263029	hypothetical protein	-	3e-7	At5g60750	CAAX amino terminal protease family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.95	PtpAffx.35473.1.S1_a_at	CV244186	hypothetical protein	-	3e-1	At3g23280	zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.95	PtpAffx.89237.1.A1_at	CV232343	hypothetical protein	-	3e-11	At1g21710	OGG1 (8-OXOGUANINE-DNA GLYCOSYLASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.95	PtpAffx.201757.1.S1_at	pmrna3505	hypothetical protein	-	1e+0	At1g08270	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.94	PtpAffx.249.450.S1_at	CN518216	hypothetical protein	-	1e+0	At1g52590	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.95	PtpAffx.208718.1.S1_at	pmrna17288	hypothetical protein	-	3e-2	At3g61400	2-oxoglutarate-dependent dioxygenase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.95	PtpAffx.131828.1.S1_at	BU883976	hypothetical protein	-	5e-17	At2g24220	ATPUP5	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.93	PtpAffx.22099.2.A1_s_at	CN519960	hypothetical protein	-	4e-63	At4g13430	IIL1 (ISOPROPYL MALATE ISOMERASE LARGE SUBUNIT 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.9	95.1	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.9	92.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.3	89.8	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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