Co-expression analysis

Gene ID PtpAffx.219584.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g49540: unknown protein (HF=3e+1)
Module size 6 genes
NF 0.01
%ile 2.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.3661.60.77PtpAffx.219584.1.S1_atpmrna35542--3e+1At3g49540unknown proteinO.I.H.G.S.X.
0.1016.30.77PtpAffx.16539.1.A1_atBP934558--4e+0At3g05500rubber elongation factor (REF) family proteinO.I.H.G.S.X.
0.012.20.77PtpAffx.102228.1.A1_atCV232856fasciclin-like AGP 14.8 protein-1e+1At5g51090unknown proteinO.I.H.G.S.X.
0.012.20.77PtpAffx.219703.1.S1_atpmrna35689hypothetical protein-2e-3At1g19115unknown proteinO.I.H.G.S.X.
0.012.20.78PtpAffx.208349.1.S1_atpmrna16598hypothetical protein-8e-6At5g18920unknown proteinO.I.H.G.S.X.
0.012.20.76PtpAffx.225682.1.S1_atpmrna45210hypothetical protein-8e-16At5g66420-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.696.2GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.794.7GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
3.092.9GSM372093Clone3200_LPI5_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.088.0GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.987.2GSM362890Clone1979_LPI5_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.886.4GSM327402Populus balsamifera_20071015_Etiolated_seedling_6d_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.785.5GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM244433Mlp infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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