Co-expression analysis

Gene ID	PtpAffx.219346.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g02490: heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2) (HF=6e-14)
Module size	13 genes
NF	0.08
%ile	17.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	97.4	0.89	PtpAffx.219346.1.S1_s_at	pmrna35239	hypothetical protein	-	6e-14	At5g02490	heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.93	PtpAffx.129707.1.S1_at	CF231921	hypothetical protein	-	7e-2	At5g46030	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.94	PtpAffx.214260.1.S1_at	pmrna27746	hypothetical protein	-	1e-54	At4g31770	calcineurin-like phosphoesterase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.91	PtpAffx.4868.1.S1_at	CV243275	-	-	1e-8	At1g55000	peptidoglycan-binding LysM domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.93	PtpAffx.214474.1.S1_at	pmrna28150	hypothetical protein	-	1e-6	At5g58005	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.92	PtpAffx.211491.1.S1_at	pmrna22521	hypothetical protein	-	2e-22	At4g31010	RNA binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.92	PtpAffx.105370.1.S1_s_at	BU820284	hypothetical protein	-	3e-1	At5g17610	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.91	PtpAffx.58188.1.S1_at	CN192540	hypothetical protein	-	1e-3	At1g07310	C2 domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.93	PtpAffx.202121.1.S1_s_at	pmrna4240	hypothetical protein	-	1e-19	At3g60240	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.94	PtpAffx.152736.1.S1_at	CX169611	-	-	4e-1	At2g28500	LBD11 (LOB DOMAIN-CONTAINING PROTEIN 11)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.91	PtpAffx.125257.1.S1_at	CK099208	hypothetical protein	-	5e-6	At5g57060	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.93	PtpAffx.11716.1.A1_a_at	CV253950	-	-	5e-32	At1g30970	SUF4 (suppressor of FRIGIDA4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.92	Ptp.705.1.A1_at	CK087789	-	-	3e-5	At5g57140	PAP28 (PURPLE ACID PHOSPHATASE 28)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.3	97.7	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.5	96.1	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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