Co-expression analysis

Gene ID	PtpAffx.219306.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g21280: oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ) (HF=2e-1)
Module size	6 genes
NF	0.86
%ile	99.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.93	PtpAffx.219306.1.S1_s_at	pmrna35187	hypothetical protein	-	2e-1	At4g21280	oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.91	99.2	0.94	PtpAffx.5092.2.S1_a_at	CV271220	anthocyanidin reductase	-	4e-2	At1g61720	BAN (BANYULS)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.83	97.0	0.94	PtpAffx.249.67.A1_at	CV240981	-	-	4e-12	At1g47710	serpin, putative / serine protease inhibitor, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.83	97.0	0.94	PtpAffx.200015.1.S1_at	pmrna24	cytochrome P450	-	8e-1	At5g36130	cytochrome P450 family	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.92	Ptp.6057.1.S1_s_at	CK090638	anthocyanidin synthase	-	5e-2	At4g22880	LDOX (LEUCOANTHOCYANIDIN DIOXYGENASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.59	84.9	0.92	PtpAffx.145936.1.S1_at	CX181983	-	-	5e+0	At5g48190	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.0	98.7	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
6.5	97.8	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.1	96.8	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.0	96.6	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.4	95.9	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.3	93.7	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6	91.3	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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