Co-expression analysis

Gene ID PtpAffx.219256.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g53400: unknown protein (HF=3e+0)
Module size 6 genes
NF 0.49
%ile 80.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.83PtpAffx.219256.1.S1_atpmrna35121hypothetical protein-3e+0At1g53400unknown proteinO.I.H.G.S.X.
0.6791.10.84PtpAffx.217324.1.S1_atpmrna32538hypothetical protein-4e+0At5g64920CIP8 (COP1-INTERACTING PROTEIN 8)O.I.H.G.S.X.
0.5683.90.82PtpAffx.112707.1.A1_atDN486456--1e+1At5g01445unknown proteinO.I.H.G.S.X.
0.5078.60.83PtpAffx.219961.1.S1_atpmrna36144hypothetical protein-7e-10At1g30950UFO (UNUSUAL FLORAL ORGANS)O.I.H.G.S.X.
0.4067.00.82PtpAffx.225085.1.S1_s_atpmrna44181hypothetical protein-4e+0At5g65274-O.I.H.G.S.X.
0.2340.50.81PtpAffx.216428.1.S1_atpmrna31200hypothetical protein-1e+1At5g25280serine-rich protein-relatedO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.797.3GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
5.597.1GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
4.596.1GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.794.7GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.490.4GSM244440Mixed infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.188.6GSM244439Mixed infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.188.6GSM372043Clone1979_LPI5_N-_8w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.188.6GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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