Co-expression analysis

Gene ID	PtpAffx.219256.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g53400: unknown protein (HF=3e+0)
Module size	6 genes
NF	0.49
%ile	80.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.83	PtpAffx.219256.1.S1_at	pmrna35121	hypothetical protein	-	3e+0	At1g53400	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.84	PtpAffx.217324.1.S1_at	pmrna32538	hypothetical protein	-	4e+0	At5g64920	CIP8 (COP1-INTERACTING PROTEIN 8)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.56	83.9	0.82	PtpAffx.112707.1.A1_at	DN486456	-	-	1e+1	At5g01445	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.83	PtpAffx.219961.1.S1_at	pmrna36144	hypothetical protein	-	7e-10	At1g30950	UFO (UNUSUAL FLORAL ORGANS)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.82	PtpAffx.225085.1.S1_s_at	pmrna44181	hypothetical protein	-	4e+0	At5g65274	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.81	PtpAffx.216428.1.S1_at	pmrna31200	hypothetical protein	-	1e+1	At5g25280	serine-rich protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.7	97.3	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
5.5	97.1	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.5	96.1	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.4	90.4	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1	88.6	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1	88.6	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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