Co-expression analysis

Gene ID	PtpAffx.219021.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g56110: PRA1.B1 (PRENYLATED RAB ACCEPTOR 1.B1) (HF=2e+0)
Module size	7 genes
NF	0.04
%ile	9.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	99.3	0.79	PtpAffx.219021.1.S1_at	pmrna34811	hypothetical protein	-	2e+0	At3g56110	PRA1.B1 (PRENYLATED RAB ACCEPTOR 1.B1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.87	PtpAffx.208990.1.S1_at	pmrna17817	hypothetical protein	-	1e-7	At1g26160	metal-dependent phosphohydrolase HD domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.86	PtpAffx.218509.1.S1_at	pmrna34158	hypothetical protein	-	7e+0	At3g09860	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.89	PtpAffx.54906.2.A1_at	BP933964	hypothetical protein	-	5e+0	At4g33700	CBS domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.86	PtpAffx.207528.1.S1_x_at	pmrna14944	hypothetical protein	-	1e-15	At3g11760	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.90	PtpAffx.206637.1.S1_at	pmrna13175	hypothetical protein	-	4e-36	At5g21930	PAA2 (P-TYPE ATPASE OF ARABIDOPSIS 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.89	PtpAffx.204724.1.S1_x_at	pmrna9308	hypothetical protein	-	8e-22	At2g14835	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.2	99.0	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.3	95.8	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.2	95.6	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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