Co-expression analysis

Gene ID	PtpAffx.218985.1.S1_x_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g41997: LCR51 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 51) (HF=5e-1)
Module size	6 genes
NF	0.31
%ile	54.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	97.0	0.92	PtpAffx.218985.1.S1_x_at	pmrna34759	hypothetical protein	-	5e-1	At2g41997	LCR51 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 51)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.93	PtpAffx.222746.1.S1_s_at	pmrna40369	hypothetical protein /// cc-nbs-lrr resistance protein	-	4e+0	At5g39810	AGL98 (AGAMOUS-LIKE 98)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.95	Ptp.7307.1.S1_at	DN492772	-	-	5e-1	At4g27520	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.95	Ptp.7444.1.S1_at	BU834918	hypothetical protein	-	7e-43	At1g10210	ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.94	PtpAffx.31538.1.A1_at	CV231411	hypothetical protein	-	1e-3	At2g33620	DNA-binding family protein / AT-hook protein 1 (AHP1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.95	PtpAffx.41002.1.S1_at	CK107111	hypothetical protein	-	1e-25	At4g36940	NAPRT1 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.7	97.9	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.4	97.0	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.8	86.4	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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