Co-expression analysis

Gene ID	PtpAffx.218924.1.S1_at
Gene name	autoinhibited calcium ATPase
Homology with Arabidopsis	Similar to At2g41560: ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4) (HF=1e-28)
Module size	6 genes
NF	0.62
%ile	91.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	86.0	1.00	PtpAffx.218924.1.S1_at	pmrna34683	autoinhibited calcium ATPase	-	1e-28	At2g41560	ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	1.00	PtpAffx.204028.1.S1_at	pmrna7945	hypothetical protein	-	6e-60	At1g65960	GAD2 (GLUTAMATE DECARBOXYLASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	1.00	PtpAffx.206298.1.S1_at	pmrna12485	hypothetical protein	-	2e-17	At3g54100	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	1.00	PtpAffx.200244.1.S1_at	pmrna472	hypothetical protein	-	3e-13	At5g13150	ATEXO70C1 (exocyst subunit EXO70 family protein C1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.56	83.9	1.00	PtpAffx.204952.1.S1_at	pmrna9797	hypothetical protein	-	6e-13	At3g46750	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	1.00	PtpAffx.202223.1.S1_at	pmrna4451	hypothetical protein	-	1e-30	At4g00350	MATE efflux family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.6	97.9	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.9	96.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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