Co-expression analysis

Gene ID PtpAffx.218912.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g29730: ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (HF=5e-3)
Module size 10 genes
NF 0.15
%ile 29.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4471.90.79PtpAffx.218912.1.S1_atpmrna34668hypothetical protein-5e-3At1g29730ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseO.I.H.G.S.X.
0.4369.70.83PtpAffx.224726.1.S1_x_atpmrna43540hypothetical protein-1e+0At1g17147-O.I.H.G.S.X.
0.4268.60.83PtpAffx.224903.1.S1_x_atpmrna43827BED finger-nbs-lrr resistance protein-1e+0At5g39950ATTRX2 (THIOREDOXIN 2)O.I.H.G.S.X.
0.3255.20.82PtpAffx.213757.1.S1_atpmrna26865hypothetical protein-3e+0At5g6751060S ribosomal protein L26 (RPL26B)O.I.H.G.S.X.
0.1525.30.84PtpAffx.216337.1.S1_atpmrna31051hypothetical protein-5e-1At1g05650polygalacturonase, putative / pectinase, putativeO.I.H.G.S.X.
0.1423.50.83PtpAffx.213940.1.S1_atpmrna27175hypothetical protein-2e-1At5g18290SIP1O.I.H.G.S.X.
0.1321.60.83PtpAffx.5743.1.A1_atCV236133--2e-2At1g36640unknown proteinO.I.H.G.S.X.
0.1219.60.83PtpAffx.93272.1.A1_atDN491919hypothetical protein-9e-1At1g80200unknown proteinO.I.H.G.S.X.
0.1118.10.85PtpAffx.222184.1.S1_atpmrna39436hypothetical protein-3e-3At4g27680MSP1 protein, putative / intramitochondrial sorting protein, putativeO.I.H.G.S.X.
0.058.30.80PtpAffx.201484.1.S1_atpmrna2915hypothetical protein-1e+0At2g20270glutaredoxin family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.597.1GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.696.2GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.295.6GSM372095Clone3200_LPI5_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
3.293.5GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
3.293.5GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.791.8GSM372097Clone3200_LPI5_N-_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.590.9GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.590.9GSM362883Clone1979_LPI2_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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