Co-expression analysis

Gene ID PtpAffx.218737.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g44380: - (HF=3e+0)
Module size 17 genes
NF 0.21
%ile 38.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6086.00.84PtpAffx.218737.1.S1_atpmrna34460hypothetical protein-3e+0At3g44380-O.I.H.G.S.X.
0.3255.20.88PtpAffx.216863.1.S1_atpmrna31905hypothetical protein-4e+0At5g36659-O.I.H.G.S.X.
0.3052.00.87PtpAffx.208497.1.S1_atpmrna16872hypothetical protein-3e-1At3g19710BCAT4 (BRANCHED-CHAIN AMINOTRANSFERASE4)O.I.H.G.S.X.
0.3052.00.90Ptp.2282.3.A1_atCV238349--2e-4At1g30910molybdenum cofactor sulfurase family proteinO.I.H.G.S.X.
0.2950.50.86PtpAffx.223633.1.S1_x_atpmrna41716hypothetical protein-2e+0Atcg00140-O.I.H.G.S.X.
0.2950.50.88PtpAffx.220044.1.S1_atpmrna36313hypothetical protein-5e-1At5g50335unknown proteinO.I.H.G.S.X.
0.2850.50.90PtpAffx.225864.1.S1_atpmrna45498hypothetical protein-1e+0At4g16500cysteine protease inhibitor family protein / cystatin family proteinO.I.H.G.S.X.
0.2747.10.87PtpAffx.9720.1.S1_a_atBU879725--3e+0At3g51020unknown proteinO.I.H.G.S.X.
0.2645.20.88PtpAffx.63163.1.A1_atCV251836hypothetical protein-2e-1At1g72170unknown proteinO.I.H.G.S.X.
0.1830.80.89PtpAffx.221797.1.S1_s_atpmrna38853hypothetical protein-8e-1At1g24210paired amphipathic helix repeat-containing proteinO.I.H.G.S.X.
0.1729.10.89PtpAffx.2026.1.S1_atBI125606--4e+0At5g62060F-box family proteinO.I.H.G.S.X.
0.1729.10.91PtpAffx.217331.1.S1_atpmrna32547hypothetical protein-1e+0At1g05290transcription factorO.I.H.G.S.X.
0.1525.30.90PtpAffx.218247.1.S1_s_atpmrna33799hypothetical protein-2e+0At3g43682unknown proteinO.I.H.G.S.X.
0.1423.50.87PtpAffx.214178.1.S1_atpmrna27576gibberellin 3-oxidase-5e-1At1g80330GA3OX4 (GIBBERELLIN 3-OXIDASE 4)O.I.H.G.S.X.
0.1016.30.89PtpAffx.249.683.A1_atBP933394--2e-32At5g03240UBQ3 (POLYUBIQUITIN 3)O.I.H.G.S.X.
0.1016.30.88PtpAffx.221803.1.S1_atpmrna38862hypothetical protein-1e+1At5g48480unknown proteinO.I.H.G.S.X.
0.0914.60.87PtpAffx.249.605.A1_atCV276304--4e-4At1g14900HMGA (HIGH MOBILITY GROUP A)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.794.7GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.892.1GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.490.4GSM372095Clone3200_LPI5_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.289.3GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.188.6GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.987.2GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.987.2GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.987.2GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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