Co-expression analysis

Gene ID	PtpAffx.218715.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to Atmg00080: - (HF=4e-28)
Module size	6 genes
NF	0.00
%ile	0.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.76	PtpAffx.218715.1.S1_at	pmrna34437	hypothetical protein	-	4e-28	Atmg00080	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.88	PtpAffx.8610.1.S1_at	CK097470	-	-	1e+0	At1g73040	jacalin lectin family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.81	PtpAffx.90753.2.S1_at	BI122874	hypothetical protein	-	7e-1	At3g62670	ARR20 (ARABIDOPSIS RESPONSE REGULATOR 20)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
-	0.4	0.83	PtpAffx.203336.1.S1_s_at	pmrna6641	hypothetical protein	-	3e-1	At5g65920	U-box domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
-	0.4	0.83	PtpAffx.200211.1.S1_s_at	pmrna397	hypothetical protein	-	3e+0	At5g50470	NF-YC7 (NUCLEAR FACTOR Y, SUBUNIT C7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
-	0.4	0.86	PtpAffx.3457.1.A1_at	DN490213	-	-	6e-7	At1g17180	ATGSTU25 (GLUTATHIONE S-TRANSFERASE TAU 25)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.4	95.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.4	95.9	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.1	95.5	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.2	93.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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