Co-expression analysis

Gene ID	PtpAffx.218700.1.S1_at
Gene name	AP2/ERF domain-containing transcription factor
Homology with Arabidopsis	Similar to At2g25820: transcription factor (HF=3e-6)
Module size	11 genes
NF	0.06
%ile	12.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.70	91.7	0.81	PtpAffx.218700.1.S1_at	pmrna34416	AP2/ERF domain-containing transcription factor	-	3e-6	At2g25820	transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.83	PtpAffx.222630.1.S1_x_at	pmrna40174	-	-	8e-1	At1g33770	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.87	PtpAffx.213864.1.S1_at	pmrna27046	hypothetical protein	-	2e-3	At2g37760	aldo/keto reductase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.87	PtpAffx.143383.1.S1_at	DN486701	-	-	4e-1	At1g76770	heat shock protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.84	Ptp.1586.2.S1_at	CV251358	-	-	4e-13	At2g42610	LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.86	PtpAffx.42009.1.S1_at	AJ775335	hypothetical protein	-	8e+0	At4g19620	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.83	PtpAffx.225723.1.S1_at	pmrna45289	cc-nbs-lrr resistance protein	-	1e-1	At3g14470	disease resistance protein (NBS-LRR class), putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.86	PtpAffx.222355.1.S1_at	pmrna39704	hypothetical protein	-	2e-2	At4g17215	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	0.84	PtpAffx.60047.3.A1_at	CK097542	-	-	1e-3	At4g37560	formamidase, putative / formamide amidohydrolase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	0.83	PtpAffx.216959.1.S1_at	pmrna32040	hypothetical protein	-	3e-1	At1g20875	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	0.83	PtpAffx.202123.1.S1_at	pmrna4244	hypothetical protein	-	4e-1	At5g57310	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.4	98.2	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.4	97.0	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.1	95.5	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3	89.8	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.7	85.5	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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