Co-expression analysis

Gene ID PtpAffx.218670.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g06890: unknown protein (HF=2e-2)
Module size 21 genes
NF 0.23
%ile 42.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7292.70.90PtpAffx.218670.1.S1_atpmrna34374hypothetical protein-2e-2At3g06890unknown proteinO.I.H.G.S.X.
0.4268.60.93Ptp.835.1.S1_s_atCK100129hypothetical protein-3e+0At5g62750unknown proteinO.I.H.G.S.X.
0.3964.60.94PtpAffx.52013.2.S1_atBU874011hypothetical protein-4e-14At3g12060unknown proteinO.I.H.G.S.X.
0.3964.60.95Ptp.1483.1.S1_atCK093490hypothetical protein-3e-83At1g55350DEK1 (DEFECTIVE KERNEL 1)O.I.H.G.S.X.
0.3762.30.93PtpAffx.21021.2.S1_atCV266481hypothetical protein-1e-4At2g20100ethylene-responsive family proteinO.I.H.G.S.X.
0.3458.30.95Ptp.1832.1.A1_atCK093233--6e+0At1g31620unknown proteinO.I.H.G.S.X.
0.3052.00.94PtpAffx.3940.1.S1_atDN489723chromatin remodeling complex subunit-2e-29At5g14170CHC1O.I.H.G.S.X.
0.2850.50.95PtpAffx.9657.1.A1_atCV255373hypothetical protein-1e-10At5g42620metalloendopeptidase/ zinc ion bindingO.I.H.G.S.X.
0.2850.50.94PtpAffx.7350.1.S1_atCK089184hypothetical protein-2e+0At2g34310unknown proteinO.I.H.G.S.X.
0.2645.20.94PtpAffx.107814.1.A1_atCV265734hypothetical protein-2e-1At5g11970unknown proteinO.I.H.G.S.X.
0.2645.20.93Ptp.710.1.A1_atCK087892hypothetical protein-4e-7At5g57050ABI2 (ABA INSENSITIVE 2)O.I.H.G.S.X.
0.2543.60.93PtpAffx.67395.1.S1_atDN491069hypothetical protein-4e-14At3g48430REF6 (RELATIVE OF EARLY FLOWERING 6)O.I.H.G.S.X.
0.2340.50.93PtpAffx.218535.1.S1_atpmrna34191nramp transporter-4e-64At2g23150NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3)O.I.H.G.S.X.
0.2136.50.94PtpAffx.113839.1.A1_atCV268655hypothetical protein-6e-22At1g31420FEI1 (FEI 1)O.I.H.G.S.X.
0.2136.50.95PtpAffx.3477.2.S1_atAJ769221hypothetical protein-1e-5At5g04670-O.I.H.G.S.X.
0.1729.10.94PtpAffx.37242.1.A1_atCV259589hypothetical protein-4e-3At3g18210oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.1626.90.93Ptp.1857.1.S1_atCK093662hypothetical protein-9e-21At2g40980-O.I.H.G.S.X.
0.1525.30.95Ptp.4387.1.S1_atCV227711hypothetical protein-2e-18At2g16940RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.1423.50.94PtpAffx.58367.1.A1_atCK097580hypothetical protein-4e-16At4g18465RNA helicase, putativeO.I.H.G.S.X.
0.1016.30.92Ptp.7811.1.A1_atCV230622hypothetical protein-1e-57At1g16270protein kinase family proteinO.I.H.G.S.X.
0.0812.90.95PtpAffx.153701.1.A1_atCV242061hypothetical protein-9e-5At1g09060transcription factor jumonji (jmjC) domain-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.796.3GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.995.1GSM327406Populus balsamifera_1006_young_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM372099Clone3200_LPI5_N+_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.691.3GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM327397Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM372100Clone3200_LPI5_N+_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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