Co-expression analysis

Gene ID PtpAffx.218645.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g15350: unknown protein (HF=3e-1)
Module size 11 genes
NF 0.09
%ile 18.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6488.40.84PtpAffx.218645.1.S1_atpmrna34339hypothetical protein-3e-1At1g15350unknown proteinO.I.H.G.S.X.
0.2950.50.91PtpAffx.28818.1.S1_atBU812529--4e+0At4g14305-O.I.H.G.S.X.
0.2034.60.89PtpAffx.224758.1.S1_atpmrna43591nbs-lrr resistance protein-9e-2At4g02910unknown proteinO.I.H.G.S.X.
0.1830.80.86PtpAffx.205845.1.S1_x_atpmrna11575hypothetical protein-5e-7At1g75980-O.I.H.G.S.X.
0.1423.50.89PtpAffx.208855.1.S1_atpmrna17554hypothetical protein-2e-1At1g80910unknown proteinO.I.H.G.S.X.
0.0914.60.86PtpAffx.216363.1.S1_atpmrna31083hypothetical protein-2e-1At5g42957unknown proteinO.I.H.G.S.X.
0.0812.90.89PtpAffx.153410.1.A1_atCV258412--6e-1At4g20030RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.0711.60.86PtpAffx.223222.1.S1_x_atpmrna41101hypothetical protein-1e+0At1g59700ATGSTU16 (GLUTATHIONE S-TRANSFERASE TAU 16)O.I.H.G.S.X.
0.0711.60.88PtpAffx.209606.1.S1_atpmrna18995hypothetical protein-3e-8At4g22090pectate lyase family proteinO.I.H.G.S.X.
0.058.30.86PtpAffx.147944.1.S1_atAJ777676hypothetical protein-3e-1At4g14930acid phosphatase survival protein SurE, putativeO.I.H.G.S.X.
0.046.90.85PtpAffx.202211.1.S1_atpmrna4430hypothetical protein-1e-1At2g34990zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.894.9GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.494.0GSM244438Mmd infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
3.293.5GSM362890Clone1979_LPI5_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.892.1GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.389.8GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.785.5GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.785.5GSM327359Populus balsamifera_20071015_Seedling_continuous_light_6d_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM372098Clone3200_LPI5_N-_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.684.5GSM327398Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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