Co-expression analysis

Gene ID	PtpAffx.218645.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g15350: unknown protein (HF=3e-1)
Module size	11 genes
NF	0.09
%ile	18.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	88.4	0.84	PtpAffx.218645.1.S1_at	pmrna34339	hypothetical protein	-	3e-1	At1g15350	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.91	PtpAffx.28818.1.S1_at	BU812529	-	-	4e+0	At4g14305	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.89	PtpAffx.224758.1.S1_at	pmrna43591	nbs-lrr resistance protein	-	9e-2	At4g02910	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.86	PtpAffx.205845.1.S1_x_at	pmrna11575	hypothetical protein	-	5e-7	At1g75980	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.89	PtpAffx.208855.1.S1_at	pmrna17554	hypothetical protein	-	2e-1	At1g80910	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.86	PtpAffx.216363.1.S1_at	pmrna31083	hypothetical protein	-	2e-1	At5g42957	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	0.89	PtpAffx.153410.1.A1_at	CV258412	-	-	6e-1	At4g20030	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.86	PtpAffx.223222.1.S1_x_at	pmrna41101	hypothetical protein	-	1e+0	At1g59700	ATGSTU16 (GLUTATHIONE S-TRANSFERASE TAU 16)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.88	PtpAffx.209606.1.S1_at	pmrna18995	hypothetical protein	-	3e-8	At4g22090	pectate lyase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.86	PtpAffx.147944.1.S1_at	AJ777676	hypothetical protein	-	3e-1	At4g14930	acid phosphatase survival protein SurE, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.85	PtpAffx.202211.1.S1_at	pmrna4430	hypothetical protein	-	1e-1	At2g34990	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.8	94.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.2	93.5	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.8	92.1	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.3	89.8	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.7	85.5	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7	85.5	GSM327359	Populus balsamifera_20071015_Seedling_continuous_light_6d_3	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.6	84.5	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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