Co-expression analysis

Gene ID	PtpAffx.218577.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g54531: unknown protein (HF=3e-1)
Module size	6 genes
NF	0.22
%ile	39.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.47	74.6	0.94	PtpAffx.218577.1.S1_s_at	pmrna34240	hypothetical protein	-	3e-1	At5g54531	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.95	PtpAffx.75827.1.A1_s_at	CV255850	hypothetical protein	-	1e-2	At1g62240	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.95	PtpAffx.70832.1.S1_at	BU820372	-	-	4e-23	At3g53090	UPL7	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.95	PtpAffx.161360.1.S1_at	CN524282	hypothetical protein	-	1e-1	Atmg00270	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.95	PtpAffx.126125.1.S1_s_at	AI162512	hypothetical protein	-	2e-12	At1g29260	PEX7	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	0.95	PtpAffx.221585.1.S1_s_at	pmrna38543	hypothetical protein	-	2e-56	At5g37370	ATSRL1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	93.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.9	92.5	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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