Co-expression analysis

Gene ID PtpAffx.218577.1.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g54531: unknown protein (HF=3e-1)
Module size 6 genes
NF 0.22
%ile 39.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4774.60.94PtpAffx.218577.1.S1_s_atpmrna34240hypothetical protein-3e-1At5g54531unknown proteinO.I.H.G.S.X.
0.4067.00.95PtpAffx.75827.1.A1_s_atCV255850hypothetical protein-1e-2At1g62240unknown proteinO.I.H.G.S.X.
0.1830.80.95PtpAffx.161360.1.S1_atCN524282hypothetical protein-1e-1Atmg00270-O.I.H.G.S.X.
0.1525.30.95PtpAffx.126125.1.S1_s_atAI162512hypothetical protein-2e-12At1g29260PEX7O.I.H.G.S.X.
0.0812.90.95PtpAffx.221585.1.S1_s_atpmrna38543hypothetical protein-2e-56At5g37370ATSRL1O.I.H.G.S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.293.5GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.992.5GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.987.2GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

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