Co-expression analysis

Gene ID PtpAffx.218535.1.S1_at
Gene name nramp transporter
Homology with ArabidopsisSimilar to At2g23150: NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3) (HF=4e-64)
Module size 17 genes
NF 0.35
%ile 60.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6991.50.94PtpAffx.218535.1.S1_atpmrna34191nramp transporter-4e-64At2g23150NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3)O.I.H.G.S.X.
0.5480.80.96Ptp.2433.1.S1_s_atCK093521hypothetical protein-3e-2At3g22170FHY3 (FAR-RED ELONGATED HYPOCOTYLS 3)O.I.H.G.S.X.
0.4167.70.95PtpAffx.202894.1.S1_atpmrna5727hypothetical protein-2e-32At1g17440EER4 (ENHANCED ETHYLENE RESPONSE 4)O.I.H.G.S.X.
0.4167.70.94PtpAffx.7350.1.S1_atCK089184hypothetical protein-2e+0At2g34310unknown proteinO.I.H.G.S.X.
0.3458.30.95Ptp.1328.1.S1_atCK093626hypothetical protein-2e+0At5g61750cupin family proteinO.I.H.G.S.X.
0.3458.30.96Ptp.4387.1.S1_atCV227711hypothetical protein-2e-18At2g16940RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.3357.50.96PtpAffx.204254.1.S1_s_atpmrna8373hypothetical protein-6e-72At2g21270ubiquitin fusion degradation UFD1 family proteinO.I.H.G.S.X.
0.3357.50.96Ptp.2204.1.S1_atCK089785hypothetical protein-1e+1At4g15830bindingO.I.H.G.S.X.
0.3255.20.95PtpAffx.132056.1.A1_s_atDN491976DNA methyltransferase-8e-3At5g14620DRM2 (DOMAINS REARRANGED METHYLTRANSFERASE 2)O.I.H.G.S.X.
0.3153.70.96PtpAffx.18054.1.A1_atCV263289--1e-1At5g64810WRKY51O.I.H.G.S.X.
0.3153.70.95Ptp.3286.1.S1_atBU813822hypothetical protein-1e+0At3g45610Dof-type zinc finger domain-containing proteinO.I.H.G.S.X.
0.3052.00.96PtpAffx.57521.1.S1_atDN494926hypothetical protein-7e-2At1g73040jacalin lectin family proteinO.I.H.G.S.X.
0.3052.00.96PtpAffx.120155.1.S1_s_atCK319299hypothetical protein-5e-11At5g35753-O.I.H.G.S.X.
0.2950.50.96PtpAffx.107855.1.A1_atCV268747hypothetical protein-1e-10At3g46980transporter-relatedO.I.H.G.S.X.
0.2543.60.96PtpAffx.153701.1.A1_atCV242061hypothetical protein-9e-5At1g09060transcription factor jumonji (jmjC) domain-containing proteinO.I.H.G.S.X.
0.2543.60.96PtpAffx.135893.1.A1_atCK097046histone acetyltransferase /// histone acetyltransferase-1e-41At1g79000HAC1 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1)O.I.H.G.S.X.
0.1932.70.95PtpAffx.15066.1.S1_s_atCV261957hypothetical protein-4e+0At5g16330NC domain-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.293.5GSM372099Clone3200_LPI5_N+_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.992.5GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.490.4GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM372100Clone3200_LPI5_N+_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.088.0GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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