Co-expression analysis

Gene ID	PtpAffx.218505.1.S1_x_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g05680: UDP-glucoronosyl/UDP-glucosyl transferase family protein (HF=1e-6)
Module size	8 genes
NF	0.12
%ile	23.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	92.6	0.83	PtpAffx.218505.1.S1_x_at	pmrna34153	hypothetical protein	-	1e-6	At1g05680	UDP-glucoronosyl/UDP-glucosyl transferase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.85	PtpAffx.80954.1.S1_at	BU865987	hypothetical protein	-	2e-11	At5g13210	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.85	PtpAffx.143539.1.S1_at	CX184307	hypothetical protein	-	6e-1	At2g24870	self-incompatibility protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.88	Ptp.973.1.A1_at	CK089832	hypothetical protein	-	9e-1	At5g47670	NF-YB6 (NUCLEAR FACTOR Y, SUBUNIT B6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.88	Ptp.5130.1.S1_s_at	BU872575	hypothetical protein	-	1e+0	At2g26880	AGL41 (AGAMOUS-LIKE 41)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.86	PtpAffx.205785.1.S1_at	pmrna11442	hypothetical protein	-	4e-33	At1g27620	transferase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.85	PtpAffx.202066.1.S1_at	pmrna4125	hypothetical protein	-	6e-4	At2g26560	PLA2A (PHOSPHOLIPASE A 2A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.86	PtpAffx.215449.1.S1_at	pmrna29652	hypothetical protein	-	4e-1	At4g03620	myosin heavy chain-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.7	97.3	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.9	95.1	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the barley gene, HV_CEb0006N04r2_at, orthologous to the query gene, PtpAffx.218505.1.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	HV_CEb0006N04r2_at	At1g05680	-	-	2e-8	At2g43820	UGT74F2 (UDP-GLUCOSYLTRANSFERASE 74F2)	O.I.	H.G.	S.X.	Please select
0.13	11.6	HI09P06r_at	At1g05680	-	-	8e+0	Atcg00720	-	O.I.	H.G.	S.X.	Please select
0.07	5.8	Contig21310_at	At1g05680	-	-	1e-1	At5g24250	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	3.4	HV_CEa0002N08r2_at	At1g05680	-	-	6e-24	At3g25860	LTA2	O.I.	H.G.	S.X.	Please select
0.04	3.4	HW06C04u_x_at	At1g05680	-	-	7e+0	At3g05980	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	3.4	HV12N12u_at	At1g05680	-	-	7e-2	At5g41200	AGL75 (AGAMOUS-LIKE 75)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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