Co-expression analysis

Gene ID	PtpAffx.218415.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g35810: - (HF=1e+0)
Module size	10 genes
NF	0.11
%ile	21.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	94.1	0.86	PtpAffx.218415.1.S1_at	pmrna34021	hypothetical protein	-	1e+0	At5g35810	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.93	PtpAffx.204548.1.S1_at	pmrna8926	hypothetical protein	-	5e-2	At4g34880	amidase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.93	PtpAffx.212717.1.S1_at	pmrna24871	hypothetical protein	-	2e+0	At5g59000	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.91	PtpAffx.212718.1.S1_at	pmrna24872	hypothetical protein	-	1e-7	At1g18270	ketose-bisphosphate aldolase class-II family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.92	PtpAffx.152688.1.S1_at	BU874050	-	-	9e-2	At4g14385	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.90	PtpAffx.36994.1.S1_s_at	BU791149	hypothetical protein	-	1e+0	At3g33494	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.90	Ptp.6419.1.S1_at	CF235831	hypothetical protein	-	4e-82	At1g65930	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	0.93	PtpAffx.223878.1.S1_at	pmrna42098	hypothetical protein	-	1e+0	At2g23960	defense-related protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.90	PtpAffx.159874.1.A1_s_at	CV256704	hypothetical protein	-	3e-48	At3g07770	ATP binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.90	PtpAffx.203991.1.S1_at	pmrna7878	hypothetical protein	-	2e+0	At3g27770	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.7	97.9	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.8	97.4	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.9	96.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1	88.6	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7	85.5	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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