Co-expression analysis

Gene ID PtpAffx.218415.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g35810: - (HF=1e+0)
Module size 10 genes
NF 0.11
%ile 21.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7594.10.86PtpAffx.218415.1.S1_atpmrna34021hypothetical protein-1e+0At5g35810-O.I.H.G.S.X.
0.3357.50.93PtpAffx.204548.1.S1_atpmrna8926hypothetical protein-5e-2At4g34880amidase family proteinO.I.H.G.S.X.
0.2034.60.93PtpAffx.212717.1.S1_atpmrna24871hypothetical protein-2e+0At5g59000zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.1729.10.91PtpAffx.212718.1.S1_atpmrna24872hypothetical protein-1e-7At1g18270ketose-bisphosphate aldolase class-II family proteinO.I.H.G.S.X.
0.1525.30.92PtpAffx.152688.1.S1_atBU874050--9e-2At4g14385-O.I.H.G.S.X.
0.1321.60.90PtpAffx.36994.1.S1_s_atBU791149hypothetical protein-1e+0At3g33494unknown proteinO.I.H.G.S.X.
0.1016.30.90Ptp.6419.1.S1_atCF235831hypothetical protein-4e-82At1g65930isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putativeO.I.H.G.S.X.
0.0812.90.93PtpAffx.223878.1.S1_atpmrna42098hypothetical protein-1e+0At2g23960defense-related protein, putativeO.I.H.G.S.X.
0.058.30.90PtpAffx.159874.1.A1_s_atCV256704hypothetical protein-3e-48At3g07770ATP bindingO.I.H.G.S.X.
0.046.90.90PtpAffx.203991.1.S1_atpmrna7878hypothetical protein-2e+0At3g27770unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.797.9GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
5.897.4GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.996.5GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.188.6GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.088.0GSM327398Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.987.2GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.785.5GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage