Co-expression analysis

Gene ID	PtpAffx.218377.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g07475: plastocyanin-like domain-containing protein (HF=9e+0)
Module size	6 genes
NF	0.22
%ile	41.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	84.9	0.82	PtpAffx.218377.1.S1_at	pmrna33971	hypothetical protein	-	9e+0	At5g07475	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.84	PtpAffx.215951.1.S1_at	pmrna30431	hypothetical protein	-	1e+0	At2g26940	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.85	PtpAffx.200083.1.S1_s_at	pmrna151	hypothetical protein	-	9e+0	At5g59310	LTP4 (LIPID TRANSFER PROTEIN 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.84	PtpAffx.146878.3.A1_at	CV229184	-	-	5e+0	At5g35631	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.87	PtpAffx.25648.2.A1_s_at	CV230643	hypothetical protein	-	6e-14	At4g02280	SUS3 (sucrose synthase 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.84	PtpAffx.211166.1.S1_at	pmrna21950	hypothetical protein	-	2e-26	At5g54570	BGLU41 (BETA GLUCOSIDASE 41)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.6	99.0	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
6.4	97.7	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.9	97.4	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.2	96.8	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.7	96.3	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.4	95.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.0	92.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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