Co-expression analysis

Gene ID	PtpAffx.218375.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g29470: phospholipase A2, putative (HF=3e-1)
Module size	6 genes
NF	0.48
%ile	77.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	96.0	0.83	PtpAffx.218375.1.S1_at	pmrna33969	-	-	3e-1	At4g29470	phospholipase A2, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.85	PtpAffx.218375.1.S1_x_at	pmrna33969	hypothetical protein	-	3e-1	At4g29470	phospholipase A2, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.90	PtpAffx.203561.1.S1_at	pmrna7069	hypothetical protein	-	2e-21	At3g27890	NQR (NADPH:QUINONE OXIDOREDUCTASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.86	Ptp.1215.1.A1_at	CK090318	cytochrome P450 /// cytochrome P450 /// cytochrome P450	-	3e+0	At1g66540	cytochrome P450, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.88	PtpAffx.126959.1.A1_at	CV277847	hypothetical protein	-	4e+0	At4g36925	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.86	PtpAffx.221180.1.S1_at	pmrna37857	hypothetical protein	-	2e-66	At5g09890	protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.5	98.6	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
5.1	96.8	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.1	93.2	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.9	92.5	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6	91.3	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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