Co-expression analysis

Gene ID PtpAffx.218251.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g05050: UBQ11 (UBIQUITIN 11) (HF=2e+1)
Module size 6 genes
NF 0.44
%ile 73.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7192.60.81PtpAffx.218251.1.S1_atpmrna33803hypothetical protein-2e+1At4g05050UBQ11 (UBIQUITIN 11)O.I.H.G.S.X.
0.5078.60.81PtpAffx.218048.1.S1_atpmrna33565hypothetical protein-2e+0At5g28450chlorophyll A-B binding protein, chloroplast, putative / LHCI type II CAB, putativeO.I.H.G.S.X.
0.4471.90.81PtpAffx.203993.1.S1_atpmrna7880hypothetical protein-3e+0At5g64240AtMC3 (metacaspase 3)O.I.H.G.S.X.
0.3153.70.80PtpAffx.119247.1.A1_atDN486218--4e+0At5g50665unknown proteinO.I.H.G.S.X.
0.2950.50.80PtpAffx.211622.1.S1_atpmrna22777--9e-6At1g35580CINV1 (cytosolic invertase 1)O.I.H.G.S.X.
0.2543.60.79PtpAffx.210088.1.S1_atpmrna19871hypothetical protein-1e+0At3g09600myb family transcription factorO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.799.2GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.997.4GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.395.8GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.694.5GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.088.0GSM328277Populus x canescens root control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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