Co-expression analysis

Gene ID	PtpAffx.218251.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g05050: UBQ11 (UBIQUITIN 11) (HF=2e+1)
Module size	6 genes
NF	0.44
%ile	73.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	92.6	0.81	PtpAffx.218251.1.S1_at	pmrna33803	hypothetical protein	-	2e+1	At4g05050	UBQ11 (UBIQUITIN 11)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.81	PtpAffx.218048.1.S1_at	pmrna33565	hypothetical protein	-	2e+0	At5g28450	chlorophyll A-B binding protein, chloroplast, putative / LHCI type II CAB, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.81	PtpAffx.203993.1.S1_at	pmrna7880	hypothetical protein	-	3e+0	At5g64240	AtMC3 (metacaspase 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.80	PtpAffx.119247.1.A1_at	DN486218	-	-	4e+0	At5g50665	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.80	PtpAffx.211622.1.S1_at	pmrna22777	-	-	9e-6	At1g35580	CINV1 (cytosolic invertase 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.79	PtpAffx.210088.1.S1_at	pmrna19871	hypothetical protein	-	1e+0	At3g09600	myb family transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.7	99.2	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.9	97.4	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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