Co-expression analysis

Gene ID PtpAffx.218224.1.S1_x_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g51325: zinc finger (C3HC4-type RING finger) family protein (HF=2e+0)
Module size 7 genes
NF 0.16
%ile 31.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5582.20.92PtpAffx.218224.1.S1_x_atpmrna33774hypothetical protein-2e+0At3g51325zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4067.00.91PtpAffx.249.670.A1_atBP930255--7e-45At4g05050UBQ11 (UBIQUITIN 11)O.I.H.G.S.X.
0.4067.00.92PtpAffx.220310.1.S1_atpmrna36680hypothetical protein-4e-1At4g29850unknown proteinO.I.H.G.S.X.
0.2645.20.92PtpAffx.217755.1.S1_atpmrna33144hypothetical protein-6e+0At2g06530VPS2.1O.I.H.G.S.X.
0.2238.30.92PtpAffx.215118.1.S1_atpmrna29119cytochrome P450-1e+0At4g27360dynein light chain, putativeO.I.H.G.S.X.
0.0812.90.92PtpAffx.205970.1.S1_atpmrna11840hypothetical protein-8e-1At5g09750HEC3 (HECATE 3)O.I.H.G.S.X.
0.0711.60.92PtpAffx.216556.1.S1_atpmrna31403hypothetical protein-8e+0At1g68000ATPIS1 (PHOSPHATIDYLINOSITOL SYNTHASE 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.798.3GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
6.597.8GSM328066Populus x canescens leaf control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.696.2GSM372093Clone3200_LPI5_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
3.794.7GSM328059Populus x canescens leaf control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.794.7GSM372095Clone3200_LPI5_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.791.8GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.691.3GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.389.8GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.886.4GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.886.4GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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