CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.218019.1.S1_at

Gene name flavonoid o-methyltransferase related
Homology with Arabidopsis Similar to At4g35150: O-methyltransferase family 2 protein (HF=2e-3)

Module size 6 genes

NF 0.48

%ile 78.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 78.6 0.89 PtpAffx.218019.1.S1_at pmrna33519 flavonoid o-methyltransferase related - 2e-3 At4g35150 O-methyltransferase family 2 protein O.I. H.G. S.X.
0.63 88.1 0.86 PtpAffx.225658.1.S1_s_at pmrna45158 hypothetical protein - 6e-11 At1g14550 anionic peroxidase, putative O.I. H.G. S.X.
0.60 86.0 0.84 PtpAffx.56310.1.A1_at CV270016 - - 3e+0 At5g45350 proline-rich family protein O.I. H.G. S.X.
0.60 86.0 0.89 PtpAffx.11493.1.S1_at CV263491 - - 2e+1 At5g17060 ATARFB1B O.I. H.G. S.X.
0.32 55.2 0.85 PtpAffx.222517.1.S1_at pmrna40011 hypothetical protein - 7e-79 At5g60700 glycosyltransferase family protein 2 O.I. H.G. S.X.
0.27 47.1 0.85 PtpAffx.212673.1.S1_at pmrna24790 hypothetical protein - 3e-11 At1g68380 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.5 97.1 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.1 95.5 GSM372043 Clone1979_LPI5_N-_8w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.3 93.7 GSM372042 Clone1979_LPI5_N-_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5 90.9 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM372045 Clone1979_LPI5_N+_8w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8 86.4 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g35150, orthologous to the query gene, PtpAffx.218019.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.50 65.3 At4g35150 829667 O-methyltransferase family 2 protein F:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFMO O.I. H.G. S.X.
0.67 81.6 At3g26330 822237 CYP71B37 putative cytochrome P450 O.I. H.G. S.X.
0.44 57.2 At2g18360 816351 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:endomembrane system;BOMPFA O.I. H.G. S.X.
0.33 38.1 At5g63560 836475 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF O.I. H.G. S.X.
0.27 26.2 At5g09480 830807 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPVA O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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