Co-expression analysis

Gene ID	PtpAffx.218019.1.S1_at
Gene name	flavonoid o-methyltransferase related
Homology with Arabidopsis	Similar to At4g35150: O-methyltransferase family 2 protein (HF=2e-3)
Module size	6 genes
NF	0.48
%ile	78.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	78.6	0.89	PtpAffx.218019.1.S1_at	pmrna33519	flavonoid o-methyltransferase related	-	2e-3	At4g35150	O-methyltransferase family 2 protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.86	PtpAffx.225658.1.S1_s_at	pmrna45158	hypothetical protein	-	6e-11	At1g14550	anionic peroxidase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.84	PtpAffx.56310.1.A1_at	CV270016	-	-	3e+0	At5g45350	proline-rich family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.89	PtpAffx.11493.1.S1_at	CV263491	-	-	2e+1	At5g17060	ATARFB1B	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.85	PtpAffx.222517.1.S1_at	pmrna40011	hypothetical protein	-	7e-79	At5g60700	glycosyltransferase family protein 2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.85	PtpAffx.212673.1.S1_at	pmrna24790	hypothetical protein	-	3e-11	At1g68380	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.5	97.1	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.1	95.5	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.3	93.7	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM372045	Clone1979_LPI5_N+_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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