Co-expression analysis

Gene ID	PtpAffx.218007.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g23810: SAHH2 (S-ADENOSYL-L-HOMOCYSTEINE (SAH) HYDROLASE 2) (HF=4e-2)
Module size	7 genes
NF	0.10
%ile	20.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.39	64.6	0.76	PtpAffx.218007.1.S1_at	pmrna33503	-	-	4e-2	At3g23810	SAHH2 (S-ADENOSYL-L-HOMOCYSTEINE (SAH) HYDROLASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.76	PtpAffx.110043.1.A1_at	CK094387	-	-	4e+0	At4g10100	CNX7	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.80	PtpAffx.16308.2.S1_at	DN491143	-	-	1e+0	At5g19100	extracellular dermal glycoprotein-related / EDGP-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.76	PtpAffx.140093.1.A1_at	CV273001	-	-	1e+0	At4g03115	binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.76	PtpAffx.217324.1.S1_at	pmrna32538	hypothetical protein	-	4e+0	At5g64920	CIP8 (COP1-INTERACTING PROTEIN 8)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.76	PtpAffx.210829.1.S1_at	pmrna21262	hypothetical protein	-	1e+0	At1g71970	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.76	PtpAffx.213939.1.S1_at	pmrna27172	hypothetical protein	-	4e-1	At5g67390	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.9	97.4	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage