Co-expression analysis

Gene ID PtpAffx.218003.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g59320: LTP3 (LIPID TRANSFER PROTEIN 3) (HF=6e+0)
Module size 7 genes
NF 0.05
%ile 11.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6388.10.81PtpAffx.218003.1.S1_atpmrna33499hypothetical protein-6e+0At5g59320LTP3 (LIPID TRANSFER PROTEIN 3)O.I.H.G.S.X.
0.2747.10.85PtpAffx.160203.1.A1_atCV242750--1e+0At5g55190RAN3 (RAN GTPASE 3)O.I.H.G.S.X.
0.2136.50.85PtpAffx.217483.1.S1_s_atpmrna32768--2e+0At5g12880proline-rich family proteinO.I.H.G.S.X.
0.046.90.84PtpAffx.31048.1.A1_atCV250786--5e-2At5g52190sugar isomerase (SIS) domain-containing proteinO.I.H.G.S.X.
0.046.90.85PtpAffx.222064.1.S1_s_atpmrna39269--3e+0At5g38910germin-like protein, putativeO.I.H.G.S.X.
0.023.60.83PtpAffx.43848.1.S1_atCV256217hypothetical protein-2e+0At5g11750ribosomal protein L19 family proteinO.I.H.G.S.X.
0.023.60.84PtpAffx.213553.1.S1_atpmrna26485--1e-8At2g37710RLK (receptor lectin kinase)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.697.2GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.996.5GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.996.5GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.495.9GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.494.0GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.293.5GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.691.3GSM372095Clone3200_LPI5_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.691.3GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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