Co-expression analysis

Gene ID PtpAffx.217973.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g01060: CPL3 (CAPRICE-LIKE MYB3) (HF=7e+0)
Module size 17 genes
NF 0.06
%ile 13.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6891.30.83PtpAffx.217973.1.S1_atpmrna33461hypothetical protein-7e+0At4g01060CPL3 (CAPRICE-LIKE MYB3)O.I.H.G.S.X.
0.1932.70.88Ptp.5416.2.S1_atCN522691hypothetical protein-3e-1At4g27585band 7 family proteinO.I.H.G.S.X.
0.1830.80.87PtpAffx.213159.1.S1_atpmrna25748hypothetical protein-5e-4At1g12050fumarylacetoacetase, putativeO.I.H.G.S.X.
0.1321.60.89PtpAffx.21447.2.A1_a_atCK095748hypothetical protein-4e-1At3g46540epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-relatedO.I.H.G.S.X.
0.1118.10.86PtpAffx.222883.1.S1_atpmrna40590hypothetical protein-5e+0At5g62960unknown proteinO.I.H.G.S.X.
0.1118.10.89PtpAffx.209301.1.S1_atpmrna18385hypothetical protein-1e+0At4g00070-O.I.H.G.S.X.
0.1118.10.92PtpAffx.210427.1.S1_atpmrna20477hypothetical protein-1e+0At3g05710SYP43 (SYNTAXIN OF PLANTS 43)O.I.H.G.S.X.
0.0812.90.89PtpAffx.218938.1.S1_s_atpmrna34701hypothetical protein-2e-6At3g19720ARC5 (ACCUMULATION AND REPLICATION OF CHLOROPLAST 5)O.I.H.G.S.X.
0.058.30.87PtpAffx.80269.1.S1_atCA925370hypothetical protein-5e-16At3g43790ZIFL2 (ZINC INDUCED FACILITATOR-like 2)O.I.H.G.S.X.
0.058.30.91PtpAffx.12268.1.S1_atCV261501hypothetical protein-6e-3At4g14615unknown proteinO.I.H.G.S.X.
0.058.30.86PtpAffx.218216.1.S1_atpmrna33765hypothetical protein-2e-6At1g07220-O.I.H.G.S.X.
0.046.90.89PtpAffx.139172.1.S1_atBP922379hypothetical protein-2e-5At3g59690IQD13 (IQ-domain 13)O.I.H.G.S.X.
0.035.20.89PtpAffx.45149.1.S1_atDN491536hypothetical protein-5e-22At1g37150HCS2 (holocarboxylase synthetase 2)O.I.H.G.S.X.
0.035.20.90PtpAffx.137618.1.S1_atCK107099hypothetical protein-4e-3At4g22910FZR2 (FIZZY-RELATED 2)O.I.H.G.S.X.
0.035.20.87PtpAffx.202614.1.S1_atpmrna5228hypothetical protein-2e-10At4g32360NADP adrenodoxin-like ferredoxin reductaseO.I.H.G.S.X.
0.035.20.89PtpAffx.204024.1.S1_atpmrna7934hypothetical protein-1e-1At3g14680CYP72A14O.I.H.G.S.X.
0.012.20.90PtpAffx.213002.1.S1_atpmrna25425--2e-28At4g19900glycosyl transferase-relatedO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.996.5GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM372100Clone3200_LPI5_N+_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.987.2GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.785.5GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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