Co-expression analysis

Gene ID	PtpAffx.217931.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g17820: phosphoinositide binding (HF=9e-11)
Module size	13 genes
NF	0.40
%ile	67.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.51	78.9	0.95	PtpAffx.217931.1.S1_s_at	pmrna33398	hypothetical protein	-	9e-11	At1g17820	phosphoinositide binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.64	88.4	0.96	PtpAffx.210446.1.S1_at	pmrna20513	hypothetical protein	-	2e-10	At5g38640	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.62	87.2	0.96	PtpAffx.221762.1.S1_s_at	pmrna38808	hypothetical protein	-	8e-7	At5g06160	ATO (ATROPOS)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.96	Ptp.1074.2.S1_a_at	BI129363	hypothetical protein	-	2e-45	At5g57190	PSD2 (phosphatidylserine decarboxylase 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	0.96	PtpAffx.201255.1.S1_at	pmrna2491	hypothetical protein	-	2e-1	At3g20270	lipid-binding serum glycoprotein family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.96	PtpAffx.138269.1.S1_at	AI163248	hypothetical protein	-	7e-2	At2g28360	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.97	PtpAffx.139103.2.S1_s_at	AJ777122	hypothetical protein	-	5e+0	At4g14380	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.96	PtpAffx.123000.2.S1_a_at	CX186850	hypothetical protein	-	2e-10	At1g36310	methyltransferase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.95	Ptp.3293.1.S1_s_at	CF231778	hypothetical protein	-	4e-20	At1g43190	polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.96	PtpAffx.205203.1.S1_at	pmrna10311	hypothetical protein	-	1e-50	At2g22120	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.96	PtpAffx.150645.1.S1_at	AJ778728	hypothetical protein	-	2e-15	At1g75420	glycosyl transferase family 1 protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.96	PtpAffx.96831.1.S1_s_at	CK113567	hypothetical protein	-	3e-1	At2g47210	myb family transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.96	PtpAffx.141519.1.S1_at	AJ774599	hypothetical protein	-	2e-120	At5g64070	PI-4KBETA1 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.0	92.9	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.8	86.4	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage