Co-expression analysis

Gene ID PtpAffx.217898.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g34620: SSR16 (SMALL SUBUNIT RIBOSOMAL PROTEIN 16) (HF=2e+1)
Module size 6 genes
NF 0.13
%ile 26.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7794.90.81PtpAffx.217898.1.S1_atpmrna33346hypothetical protein-2e+1At4g34620SSR16 (SMALL SUBUNIT RIBOSOMAL PROTEIN 16)O.I.H.G.S.X.
0.5582.20.83PtpAffx.206444.1.S1_atpmrna12788hypothetical protein-2e+0At5g18661unknown proteinO.I.H.G.S.X.
0.2747.10.81PtpAffx.207525.1.S1_atpmrna14937--4e+0At5g29807unknown proteinO.I.H.G.S.X.
0.2543.60.86PtpAffx.153662.1.A1_atCV248081hypothetical protein-4e+0At2g19310-O.I.H.G.S.X.
0.0711.60.82PtpAffx.88921.1.A1_atCV246098hypothetical protein-7e-1At2g43080AT-P4H-1 (A. THALIANA P4H ISOFORM 1)O.I.H.G.S.X.
0.058.30.83PtpAffx.212813.1.S1_atpmrna25077--2e+0At4g33320unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.298.8GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.797.3GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.697.2GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.596.1GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.295.6GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.195.5GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.894.9GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.494.0GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.389.8GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage