Co-expression analysis

Gene ID	PtpAffx.217816.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g50700: short-chain dehydrogenase/reductase (SDR) family protein (HF=3e-3)
Module size	6 genes
NF	0.27
%ile	49.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.38	63.7	0.82	PtpAffx.217816.1.S1_at	pmrna33230	hypothetical protein	-	3e-3	At5g50700	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.83	PtpAffx.206887.1.S1_at	pmrna13672	hypothetical protein	-	4e+0	At2g46030	UBC6 (ubiquitin-conjugating enzyme 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.81	Ptp.2849.2.A1_at	DN484673	-	-	6e+0	At3g61450	SYP73 (SYNTAXIN OF PLANTS 73)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.83	PtpAffx.40315.1.S1_at	BU891653	-	-	9e+0	At5g28310	oxidoreductase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.81	PtpAffx.224499.1.S1_at	pmrna43089	hypothetical protein	-	5e-12	At5g59810	SBT5.4	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.83	PtpAffx.203463.1.S1_at	pmrna6897	autoinhibited H+ ATPase	-	1e-44	At3g42640	AHA8 (Arabidopsis H(+)-ATPase 8)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.1	98.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4	90.4	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4	90.4	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4	90.4	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2	89.3	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

A co-expression module including the grape gene, 1619784_at, orthologous to the query gene, PtpAffx.217816.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.48	68.8	1619784_at	At5g50700	hypothetical protein LOC100248174	-	2e-9	At5g23450	ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1)	O.I.	H.G.	S.X.	Please select
0.71	89.5	1620494_at	At5g50700	-	-	1e+0	At5g55190	RAN3 (RAN GTPASE 3)	O.I.	H.G.	S.X.	Please select
0.63	84.3	1611458_at	At5g50700	hypothetical protein LOC100243644	-	2e-18	At2g35530	bZIP transcription factor family protein	O.I.	H.G.	S.X.	Please select
0.54	75.7	1612660_at	At5g50700	hypothetical protein LOC100244096	-	1e-39	At1g20960	emb1507 (embryo defective 1507)	O.I.	H.G.	S.X.	Please select
0.50	72.7	1608653_at	At5g50700	hypothetical protein LOC100263217	-	5e+0	At4g15020	DNA binding / protein dimerization	O.I.	H.G.	S.X.	Please select
0.48	68.8	1617655_at	At5g50700	hypothetical protein LOC100262391	-	5e-10	At3g16620	ATTOC120	O.I.	H.G.	S.X.	Please select
0.37	51.7	1616823_at	At5g50700	hypothetical protein LOC100257426	-	6e-7	At3g21175	ZML1 (ZIM-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.35	48.5	1617406_s_at	At5g50700	hypothetical protein LOC100266010	-	2e-8	At3g07220	transcriptional activator, putative	O.I.	H.G.	S.X.	Please select
0.32	43.1	1613582_at	At5g50700	hypothetical protein LOC100261825	-	6e-12	At5g14170	CHC1	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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