CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.217816.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g50700: short-chain dehydrogenase/reductase (SDR) family protein (HF=3e-3)

Module size 6 genes

NF 0.27

%ile 49.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.38 63.7 0.82 PtpAffx.217816.1.S1_at pmrna33230 hypothetical protein - 3e-3 At5g50700 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.43 69.7 0.83 PtpAffx.206887.1.S1_at pmrna13672 hypothetical protein - 4e+0 At2g46030 UBC6 (ubiquitin-conjugating enzyme 6) O.I. H.G. S.X.
0.32 55.2 0.81 Ptp.2849.2.A1_at DN484673 - - 6e+0 At3g61450 SYP73 (SYNTAXIN OF PLANTS 73) O.I. H.G. S.X.
0.25 43.6 0.83 PtpAffx.40315.1.S1_at BU891653 - - 9e+0 At5g28310 oxidoreductase-related O.I. H.G. S.X.
0.19 32.7 0.81 PtpAffx.224499.1.S1_at pmrna43089 hypothetical protein - 5e-12 At5g59810 SBT5.4 O.I. H.G. S.X.
0.15 25.3 0.83 PtpAffx.203463.1.S1_at pmrna6897 autoinhibited H+ ATPase - 1e-44 At3g42640 AHA8 (Arabidopsis H(+)-ATPase 8) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.1 98.5 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM244432 non infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4 90.4 GSM244430 non infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4 90.4 GSM244431 non infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4 90.4 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM244433 Mlp infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2 89.3 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.9214.1.S1_at, orthologous to the query gene, PtpAffx.217816.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 TaAffx.9214.1.S1_at At5g50700 - - 8e-1 At2g22540 SVP (SHORT VEGETATIVE PHASE) O.I. H.G. S.X.
0.10 11.3 TaAffx.111206.1.S1_at At5g50700 - - 2e+1 At1g72630 ELF4-L2 (ELF4-Like 2) O.I. H.G. S.X.
0.03 4.7 TaAffx.59306.1.S1_at At5g50700 - - 1e+0 At4g22570 APT3 (ADENINE PHOSPHORIBOSYL TRANSFERASE 3) O.I. H.G. S.X.
0.01 2.4 TaAffx.27290.1.S1_at At5g50700 - - 1e+1 At3g02640 unknown protein O.I. H.G. S.X.
0.01 2.4 TaAffx.85507.1.S1_s_at At5g50700 - - 3e+0 At1g78300 GRF2 (GENERAL REGULATORY FACTOR 2) O.I. H.G. S.X.
0.01 2.4 Ta.7944.1.S1_at At5g50700 - - 3e-3 At4g37880 protein binding / zinc ion binding O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays

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