Co-expression analysis

Gene ID	PtpAffx.217816.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g50700: short-chain dehydrogenase/reductase (SDR) family protein (HF=3e-3)
Module size	6 genes
NF	0.27
%ile	49.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.38	63.7	0.82	PtpAffx.217816.1.S1_at	pmrna33230	hypothetical protein	-	3e-3	At5g50700	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.83	PtpAffx.206887.1.S1_at	pmrna13672	hypothetical protein	-	4e+0	At2g46030	UBC6 (ubiquitin-conjugating enzyme 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.81	Ptp.2849.2.A1_at	DN484673	-	-	6e+0	At3g61450	SYP73 (SYNTAXIN OF PLANTS 73)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.83	PtpAffx.40315.1.S1_at	BU891653	-	-	9e+0	At5g28310	oxidoreductase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.81	PtpAffx.224499.1.S1_at	pmrna43089	hypothetical protein	-	5e-12	At5g59810	SBT5.4	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.83	PtpAffx.203463.1.S1_at	pmrna6897	autoinhibited H+ ATPase	-	1e-44	At3g42640	AHA8 (Arabidopsis H(+)-ATPase 8)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.1	98.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4	90.4	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4	90.4	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4	90.4	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2	89.3	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

A co-expression module including the barley gene, Contig4786_at, orthologous to the query gene, PtpAffx.217816.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.3	Contig4786_at	At5g50700	-	-	4e-5	At5g50690	AtHSD7 (hydroxysteroid dehydrogenase 7)	O.I.	H.G.	S.X.	Please select
0.92	98.4	Contig25193_at	At5g50700	-	-	1e+0	Atmg00450	-	O.I.	H.G.	S.X.	Please select
0.88	95.2	HT05D14u_s_at	At5g50700	-	-	2e+0	At3g21710	unknown protein	O.I.	H.G.	S.X.	Please select
0.85	94.5	Contig5436_at	At5g50700	-	-	6e-1	At1g44820	aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putative	O.I.	H.G.	S.X.	Please select
0.85	94.5	Contig4497_at	At5g50700	-	-	1e-2	At1g12410	CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2)	O.I.	H.G.	S.X.	Please select
0.81	92.8	Contig8622_at	At5g50700	-	-	9e-1	At2g40085	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	92.5	Contig4495_at	At5g50700	-	-	1e+0	At5g12235	CLE22 (CLAVATA3/ESR-RELATED 22)	O.I.	H.G.	S.X.	Please select
0.79	91.4	Contig4499_s_at	At5g50700	-	-	4e-18	At4g22670	AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1)	O.I.	H.G.	S.X.	Please select
0.72	87.4	Contig9656_at	At5g50700	-	-	1e+0	At2g41225	unknown protein	O.I.	H.G.	S.X.	Please select
0.71	87.1	Contig4498_at	At5g50700	-	-	2e-1	At1g28290	AGP31 (arabinogalactan-protein 31)	O.I.	H.G.	S.X.	Please select
0.67	84.7	HT07E22u_x_at	At5g50700	-	-	9e-1	At4g12850	far-red impaired responsive family protein / FAR1 family protein	O.I.	H.G.	S.X.	Please select
0.63	80.3	HVSMEl0023K24r2_at	At5g50700	-	-	4e+0	At4g09647	-	O.I.	H.G.	S.X.	Please select
0.53	69.7	Contig4495_x_at	At5g50700	-	-	1e+0	At5g12235	CLE22 (CLAVATA3/ESR-RELATED 22)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage