Co-expression analysis

Gene ID	PtpAffx.217746.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g38440: self-incompatibility protein-related (HF=3e+0)
Module size	6 genes
NF	0.06
%ile	12.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	78.6	0.78	PtpAffx.217746.1.S1_at	pmrna33134	hypothetical protein	-	3e+0	At5g38440	self-incompatibility protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.74	PtpAffx.221673.1.S1_x_at	pmrna38675	hypothetical protein	-	2e+0	At3g21150	zinc finger (B-box type) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.78	PtpAffx.217406.1.S1_at	pmrna32656	hypothetical protein	-	2e+0	At5g13930	TT4 (TRANSPARENT TESTA 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.76	PtpAffx.221411.1.S1_at	pmrna38286	hypothetical protein	-	8e+0	At5g61770	PPAN (PETER PAN-LIKE PROTEIN)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	0.74	PtpAffx.212676.1.S1_at	pmrna24793	hypothetical protein	-	5e+0	Atmg00970	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.73	PtpAffx.213355.1.S1_at	pmrna26131	hypothetical protein	-	4e-5	At1g12665	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.8	98.4	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.8	92.1	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.7	91.8	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.565.1.A1_at, orthologous to the query gene, PtpAffx.217746.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.79	92.8	ZmAffx.565.1.A1_at	At5g38440	-	-	3e+0	At5g11770	NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial	O.I.	H.G.	S.X.	Please select
0.86	96.3	Zm.5867.2.A1_at	At5g38440	-	-	1e+1	At4g19645	-	O.I.	H.G.	S.X.	Please select
0.85	95.9	Zm.9244.1.A1_at	At5g38440	hypothetical protein LOC100194342	-	7e-10	At5g08710	regulator of chromosome condensation (RCC1) family protein / UVB-resistance protein-related	O.I.	H.G.	S.X.	Please select
0.84	95.8	Zm.7780.1.A1_at	At5g38440	hypothetical protein LOC100274595	-	1e-7	At4g19230	CYP707A1	O.I.	H.G.	S.X.	Please select
0.83	95.6	Zm.5866.1.S1_at	At5g38440	AP-1 complex subunit sigma-2	-	5e-38	At2g17380	AP19	O.I.	H.G.	S.X.	Please select
0.80	94.0	Zm.2199.3.A1_at	At5g38440	hypothetical protein LOC100276113	-	1e-1	At5g17460	unknown protein	O.I.	H.G.	S.X.	Please select
0.79	92.8	ZmAffx.596.1.A1_at	At5g38440	-	-	8e-1	At1g21940	unknown protein	O.I.	H.G.	S.X.	Please select
0.78	92.5	Zm.949.1.A1_s_at	At5g38440	hypothetical protein LOC100280024	-	1e-1	At5g15970	KIN2	O.I.	H.G.	S.X.	Please select
0.78	92.5	Zm.10500.1.S1_at	At5g38440	-	-	1e+0	At1g07485	unknown protein	O.I.	H.G.	S.X.	Please select
0.77	92.1	Zm.12699.1.A1_at	At5g38440	hypothetical protein LOC100272460	-	1e+0	At2g33793	unknown protein	O.I.	H.G.	S.X.	Please select
0.76	91.1	ZmAffx.952.1.A1_at	At5g38440	ubiquitin-protein ligase	-	7e+0	At2g42680	MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A)	O.I.	H.G.	S.X.	Please select
0.75	90.8	Zm.17570.1.A1_at	At5g38440	hypothetical protein LOC100191532	-	5e+0	At1g21928	-	O.I.	H.G.	S.X.	Please select
0.72	88.6	Zm.13348.1.S1_at	At5g38440	adenosine-5'-phosphosulfate kinase	-	1e-11	At2g14750	APK (APS KINASE)	O.I.	H.G.	S.X.	Please select
0.72	88.6	Zm.18021.1.S1_at	At5g38440	Hypothetical protein LOC100194051	-	4e+0	At3g50845	-	O.I.	H.G.	S.X.	Please select
0.71	88.2	Zm.5655.2.A1_a_at	At5g38440	hypothetical protein LOC100272896	-	4e-9	At2g14910	unknown protein	O.I.	H.G.	S.X.	Please select
0.71	88.2	ZmAffx.570.1.A1_at	At5g38440	hypothetical protein LOC100191413	-	1e-2	At2g04280	unknown protein	O.I.	H.G.	S.X.	Please select
0.64	81.7	Zm.9389.3.A1_a_at	At5g38440	catalytic/ protein phosphatase type 2C	-	4e+0	At5g43410	ethylene-responsive factor, putative	O.I.	H.G.	S.X.	Please select
0.63	81.1	Zm.1477.1.S1_at	At5g38440	hypothetical protein LOC100193410	-	5e-1	At5g25480	DNMT2 (DNA METHYLTRANSFERASE-2)	O.I.	H.G.	S.X.	Please select
0.63	81.1	Zm.5864.1.A1_at	At5g38440	-	-	3e-22	At5g53480	importin beta-2, putative	O.I.	H.G.	S.X.	Please select
0.62	79.8	Zm.12583.1.A1_at	At5g38440	histone H1-like protein HON101	-	7e+0	At5g42000	ORMDL family protein	O.I.	H.G.	S.X.	Please select
0.61	79.5	Zm.9897.1.A1_at	At5g38440	hypothetical protein LOC100279693	-	6e-3	At2g34850	MEE25 (maternal effect embryo arrest 25)	O.I.	H.G.	S.X.	Please select
0.58	75.1	ZmAffx.473.1.A1_at	At5g38440	Starch synthase IIIb-2 precursor	-	3e+0	At3g12145	FLR1	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.18399.1.A1_at	At5g38440	-	-	2e+0	At5g15560	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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