Co-expression analysis

Gene ID	PtpAffx.217746.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g38440: self-incompatibility protein-related (HF=3e+0)
Module size	6 genes
NF	0.06
%ile	12.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	78.6	0.78	PtpAffx.217746.1.S1_at	pmrna33134	hypothetical protein	-	3e+0	At5g38440	self-incompatibility protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.74	PtpAffx.221673.1.S1_x_at	pmrna38675	hypothetical protein	-	2e+0	At3g21150	zinc finger (B-box type) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.78	PtpAffx.217406.1.S1_at	pmrna32656	hypothetical protein	-	2e+0	At5g13930	TT4 (TRANSPARENT TESTA 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.76	PtpAffx.221411.1.S1_at	pmrna38286	hypothetical protein	-	8e+0	At5g61770	PPAN (PETER PAN-LIKE PROTEIN)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	0.74	PtpAffx.212676.1.S1_at	pmrna24793	hypothetical protein	-	5e+0	Atmg00970	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.73	PtpAffx.213355.1.S1_at	pmrna26131	hypothetical protein	-	4e-5	At1g12665	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.8	98.4	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.8	92.1	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.7	91.8	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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